Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A10
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 235 2e-63
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 235 2e-63
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 148 6e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 148 6e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 148 6e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 1e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 43 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 6e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 4.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 5.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 5.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 9.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 235 bits (576), Expect = 2e-63
Identities = 110/123 (89%), Positives = 114/123 (92%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 384
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 385 LRP 393
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 235 bits (576), Expect = 2e-63
Identities = 110/123 (89%), Positives = 114/123 (92%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 384
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 385 LRP 393
LRP
Sbjct: 121 LRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 6e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +1
Query: 25 MQXFVKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQ FVKTLTGK ITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 90.6 bits (215), Expect = 1e-19
Identities = 38/73 (52%), Positives = 55/73 (75%)
Frame = +1
Query: 37 VKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGG 64
Query: 217 STLHLVLRLRGGT 255
S LHLVL LRGG+
Sbjct: 65 SVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 KPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 231
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 232 VLRLRGGTIEP 264
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 37 VKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
+K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 217 STLHLVLRL 243
++HLV L
Sbjct: 68 HSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 52 GKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 225
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 99 IFDSVGSFHLQCNGLPRKGFDEXL 28
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 5.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 VKTLTGKPITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--YNIQ 210
V T+ K +V + T+ +K I P D+ +LI AG+ L + L + ++
Sbjct: 8 VTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDAT 67
Query: 211 KESTLHLVLRLRGGT 255
T HLV+ + T
Sbjct: 68 DLVTFHLVIAVFNST 82
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.4 bits (53), Expect = 5.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 DVFHRSNTMQXFVKTLTGKPITL-EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 177
DV + N ++ G PIT E+E + N + +G D ++ AGK+L+
Sbjct: 436 DVPSQINPFSPSLRLKGGSPITKREIEFCRDLPNRPTSSEPNQG---DTRK---AGKRLK 489
Query: 178 DGRTLSDYNI 207
R L DY+I
Sbjct: 490 YSRNLDDYHI 499
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 9.9
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 46 LTGKPITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 216
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 217 STLH 228
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,809
Number of Sequences: 5004
Number of extensions: 42044
Number of successful extensions: 115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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