Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A07
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.3  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    27   2.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   3.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.7  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 582 LVP*SLARP-SRPC-YPGIHSSPALPSTPKVRARPGLP 475
           +VP  +A P   P  +PG  + PA+P  P   A PG P
Sbjct: 524 MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 546 CYPGIHSSPALPSTPKVRARPGLPFCLSSLS-CQEGLEDLTTRLLVD 409
           C+PGI S     +T + +A+P     +S L    +G+E +    LVD
Sbjct: 163 CFPGIFSHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQLVD 209


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 537 GIHSSPALPSTPKVRARPGLPFCLSSLSCQEGLEDLTTRLLVDC 406
           G+HS P LP+  +  +     FC S  +C      LT RL ++C
Sbjct: 374 GLHSLPNLPNFSEAGSAKSSNFCSSKDNC------LTNRLTLNC 411


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 582 LVP*SLARPSRPCYPGIHSSPALPSTPKVRARPGLP 475
           +VP   + P RP  P +  +P++P  P     P +P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVP 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,957
Number of Sequences: 5004
Number of extensions: 48453
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)