Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A07
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 31 0.75
05_06_0290 - 26961926-26962423 30 1.7
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 29 3.0
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712... 29 5.3
10_08_0185 + 15578607-15578845,15580422-15580536,15580656-155807... 28 7.0
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 9.2
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 9.2
01_05_0809 - 25422832-25422919,25423887-25424443 28 9.2
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 94 ICEYKIFFLKTTNH*TTELIQRHITPLLKKTSADGTPLLVHLNILDLC*FFLTN 255
+ E FFLK T H L+++H +P K L+ + +LD F+++
Sbjct: 633 VSELSQFFLKITYHNDQALVRKHTSPAYKTWEESSGECLLQIELLDAIRTFISS 686
>05_06_0290 - 26961926-26962423
Length = 165
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 449 WQEREERQKGRPGRARTFGVDGS----AGEEWIPG*QGREGRA 565
WQERE RQ P A T G GS AG G GR+GRA
Sbjct: 117 WQERERRQHADP-PASTLGSGGSGLRRAGASRHGGGGGRDGRA 158
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/80 (30%), Positives = 31/80 (38%)
Frame = +1
Query: 499 LRG*RERRGRMDSRVARAGRASEASWDQLD*TDQKAIRVDPVTRAXRASTGAQASTYSQP 678
LRG R R GRM R GR S+ LD ++ R R G + +
Sbjct: 262 LRGRRGRGGRMSGVSRRGGRGSD-----LDDSEDDEYSRGSSPRGRRGRGGRMSGVSRKG 316
Query: 679 SRGCRLPDTTSPRKRSFNSR 738
RG L D+ S +SR
Sbjct: 317 GRGSDLDDSEDDENDSIDSR 336
>03_05_1012 +
29670310-29670512,29670856-29671001,29671169-29671245,
29671329-29671451,29671558-29671660,29672100-29672173,
29672249-29672329,29672411-29672563,29672780-29672881
Length = 353
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -3
Query: 633 GPCHRVDPDRLLVRLIQLVP*SLARPSRPCYPGIHSSPALPSTPKVRARPGLPFCLSS 460
G C V P RL+ L+ L+ L+ P+ PC SS + T LPF L +
Sbjct: 10 GQCSLVQPPRLITCLLLLLLLLLSPPALPCSASSSSSSSSVITHLPGFHGRLPFYLET 67
>10_08_0185 +
15578607-15578845,15580422-15580536,15580656-15580745,
15581935-15582033,15582154-15582258
Length = 215
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 472 KRETRASPDLRG*RERRGRMDSRVARAGRASEASWDQLD 588
K A+PDLR R GR+D RA R S LD
Sbjct: 37 KNSPLANPDLRAPRRGGGRLDLAARRAARLSGGGEGGLD 75
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 555 SRPCYPGIHSSPALPSTPKVRARPGLPFCLSSLSCQEG 442
+RP YP ++P + P A P P C + C +G
Sbjct: 205 ARPFYPVDMATPTMVEIPSWPAAPAPPSCCAPPPCYQG 242
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 564 ARPSRPCYPGIHSSPALPS-TPKVRARPGLPFCLSSLS 454
ARP PC+PG+ P L S + + + P L SSLS
Sbjct: 511 ARPGTPCHPGVVGLPPLHSVSTQGSSHPMLQRQASSLS 548
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 461 EERQKGRPGRARTFGVDGSAGEEWIPG*QGREGRA--RLHG 577
+ER +G+PGR S G W P Q R+GR R HG
Sbjct: 58 DERHRGQPGRC------ASRGAPWRPSSQQRDGRRHHRHHG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,097
Number of Sequences: 37544
Number of extensions: 342523
Number of successful extensions: 1067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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