Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A07
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 591  LIQLVP*SLARPSRPCYPGIHSSPALP 511
            ++ L P S+ + +RP  P  ++S ALP
Sbjct: 1047 ILNLRPLSMEKGTRPMIPDDNTSLALP 1073


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 558  PSRPCYPGIHSSPALPSTPKVRARPGLPFCLSSLSCQEG 442
            P+R  Y G        ST  ++  P     LS+L  Q+G
Sbjct: 1341 PTREWYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDG 1379


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 558  PSRPCYPGIHSSPALPSTPKVRARPGLPFCLSSLSCQEG 442
            P+R  Y G        ST  ++  P     LS+L  Q+G
Sbjct: 1337 PTREWYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDG 1375


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 164 LRRYSKRLPLTARRCLYISIFWTCANFSLRTTTDDHPRRCAS 289
           LR +    P    +C Y  +  +  N  L++ ++ +  RCA+
Sbjct: 8   LRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCAN 49


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 549 PCYPGIHSSPALPSTPKVRARPGLPFCLSSLSCQEGLEDL 430
           P YPG  SS   PS+P        P  L S +   G+ DL
Sbjct: 81  PSYPGGGSSSPSPSSPSSFFSSVSPTSLGSEN-YTGISDL 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,095
Number of Sequences: 438
Number of extensions: 3261
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)