Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A03
(805 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 276 5e-73
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 271 1e-71
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 269 6e-71
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 268 8e-71
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 267 2e-70
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 267 2e-70
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 266 4e-70
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 250 3e-65
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 246 7e-64
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 240 3e-62
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 230 4e-59
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 227 3e-58
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 223 3e-57
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 223 4e-57
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 221 1e-56
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 220 4e-56
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 214 3e-54
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 212 8e-54
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 205 9e-52
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 205 9e-52
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 202 6e-51
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 196 4e-49
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 191 2e-47
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 190 4e-47
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 184 2e-45
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 184 2e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 183 4e-45
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 178 2e-43
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 175 1e-42
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 172 1e-41
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 171 2e-41
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 164 3e-39
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 164 3e-39
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 2e-38
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 154 2e-36
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 148 2e-34
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 145 1e-33
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 139 9e-32
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 134 2e-30
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 130 5e-29
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 128 1e-28
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 125 1e-27
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 124 3e-27
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 123 5e-27
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 123 6e-27
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 119 7e-26
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 118 1e-25
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 118 2e-25
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 117 3e-25
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 117 4e-25
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 117 4e-25
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 116 5e-25
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 114 2e-24
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 109 8e-23
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 109 1e-22
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 107 2e-22
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 107 4e-22
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 107 4e-22
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 105 1e-21
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 105 1e-21
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 103 7e-21
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 101 2e-20
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 101 2e-20
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 100 4e-20
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 100 9e-20
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 99 1e-19
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 99 1e-19
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 99 1e-19
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 97 3e-19
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 97 6e-19
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 96 8e-19
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 96 1e-18
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 96 1e-18
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 94 4e-18
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 93 7e-18
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 91 4e-17
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 90 7e-17
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 88 2e-16
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 87 5e-16
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 85 1e-15
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 85 1e-15
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 85 2e-15
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 85 3e-15
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 82 1e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 82 2e-14
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 81 2e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 81 4e-14
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 79 1e-13
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 77 4e-13
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 76 9e-13
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 74 5e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 72 2e-11
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 63 9e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 58 2e-07
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 51 4e-05
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 49 1e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 47 5e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 5e-04
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 45 0.003
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 44 0.006
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 40 0.073
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 38 0.30
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 37 0.68
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 37 0.68
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 36 1.6
UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing u... 35 2.8
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 35 2.8
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 35 2.8
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 34 4.8
UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 34 4.8
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 276 bits (676), Expect = 5e-73
Identities = 146/257 (56%), Positives = 168/257 (65%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G +G+IGT+LSLLIRAELG PG+L+G QIYN IVTAHA
Sbjct: 20 YLIF-GAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+A
Sbjct: 79 FGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 139 HAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH+
Sbjct: 199 SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHV 258
Query: 755 ISQERGKKETXGCLGII 805
++ GKKE G +G++
Sbjct: 259 VTYYAGKKEPFGYMGMV 275
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 271 bits (665), Expect = 1e-71
Identities = 142/257 (55%), Positives = 165/257 (64%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA
Sbjct: 19 YLVF-GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGG 77
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+A
Sbjct: 78 FGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLA 137
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 138 HAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLL 197
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH+
Sbjct: 198 SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHV 257
Query: 755 ISQERGKKETXGCLGII 805
++ GKKE G +G++
Sbjct: 258 VAYYAGKKEPFGYMGMV 274
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 269 bits (659), Expect = 6e-71
Identities = 140/224 (62%), Positives = 152/224 (67%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 220
F G+ +G++GTSLSLLIRAELG PGSLIG QIYNTIVTAHA
Sbjct: 17 FIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFG 76
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 77 NWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHG 136
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 137 GSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSL 196
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 712
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 197 PVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 268 bits (658), Expect = 8e-71
Identities = 140/257 (54%), Positives = 165/257 (64%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G +G++GT+LSLLIRAELG PG+L+G IYN IVTAHA
Sbjct: 19 YLLF-GAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGG 77
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N +
Sbjct: 78 FGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYS 137
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 138 HPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLL 197
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHI
Sbjct: 198 SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHI 257
Query: 755 ISQERGKKETXGCLGII 805
++ GKKE G +G++
Sbjct: 258 VTYYSGKKEPFGYMGMV 274
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 267 bits (655), Expect = 2e-70
Identities = 139/257 (54%), Positives = 165/257 (64%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA
Sbjct: 19 YLVF-GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGG 77
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+A
Sbjct: 78 FGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLA 137
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 138 HAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLL 197
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH+
Sbjct: 198 SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHV 257
Query: 755 ISQERGKKETXGCLGII 805
++ GKKE G +G++
Sbjct: 258 VTYYAGKKEPFGYMGMV 274
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 267 bits (655), Expect = 2e-70
Identities = 139/220 (63%), Positives = 149/220 (67%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++GTSLSLLIR ELG PGSLIG QIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 724
+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 266 bits (652), Expect = 4e-70
Identities = 137/255 (53%), Positives = 162/255 (63%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 220
F G+ SG++G S+SL+IR ELG PGSLIG QIYN+IVT+HA
Sbjct: 4 FMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFG 63
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H
Sbjct: 64 NWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHG 123
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 124 GMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSL 183
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH+I
Sbjct: 184 PVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISHMIF 243
Query: 761 QERGKKETXGCLGII 805
E GKKET G LG+I
Sbjct: 244 NESGKKETFGMLGMI 258
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 250 bits (612), Expect = 3e-65
Identities = 131/257 (50%), Positives = 158/257 (61%), Gaps = 2/257 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLI--GXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F G +G++GT S+LIR EL PG I G Q+YN ++TAHA
Sbjct: 21 FIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGG 80
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +
Sbjct: 81 FGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITS 140
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 141 HSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL 200
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHI
Sbjct: 201 SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHI 260
Query: 755 ISQERGKKETXGCLGII 805
+S G K G LG++
Sbjct: 261 VSTFSG-KPVFGYLGMV 276
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 246 bits (601), Expect = 7e-64
Identities = 133/259 (51%), Positives = 159/259 (61%), Gaps = 2/259 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 17 YLIF-AVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMV 75
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS
Sbjct: 76 GGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGL 135
Query: 389 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 568
+H G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 136 QSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILL 195
Query: 569 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 748
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++S
Sbjct: 196 LLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVS 255
Query: 749 HIISQERGKKETXGCLGII 805
HI+S G K G LG++
Sbjct: 256 HIVSAFSG-KPVFGYLGMV 273
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 240 bits (588), Expect = 3e-62
Identities = 128/259 (49%), Positives = 160/259 (61%), Gaps = 2/259 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F G SG++G +S+LIR EL P + L+G QIYN ++TAHA
Sbjct: 25 YLIF-GAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMI 83
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS
Sbjct: 84 GGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSI 143
Query: 389 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 568
+H G +VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 144 QSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLL 203
Query: 569 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 748
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 204 LLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 263
Query: 749 HIISQERGKKETXGCLGII 805
HI+S +K G +G++
Sbjct: 264 HIVS-TFSRKPVFGYIGMV 281
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 230 bits (562), Expect = 4e-59
Identities = 124/257 (48%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIISH+
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHV 258
Query: 755 ISQERGKKETXGCLGII 805
+S KK G + ++
Sbjct: 259 VS-TYSKKPVFGEISMV 274
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 227 bits (554), Expect = 3e-58
Identities = 122/257 (47%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L L SG+ G+++S++IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 139 HSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
+ IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+SHI
Sbjct: 199 SLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSHI 258
Query: 755 ISQERGKKETXGCLGII 805
+S KK G + ++
Sbjct: 259 VS-TYSKKPVFGEISMV 274
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 223 bits (546), Expect = 3e-57
Identities = 125/258 (48%), Positives = 148/258 (57%), Gaps = 1/258 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPG-SLIGXXQIYNTIVTAHAXXXXXXXXXXXXXX 211
YL + L +G+IGT+ S+LIR EL PG I Q+YN+I+TAHA
Sbjct: 19 YLIY-ALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIG 77
Query: 212 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 391
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS
Sbjct: 78 GFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQ 137
Query: 392 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 571
+H G SVDLAIF LHL+GISS +L LF AV ITA
Sbjct: 138 SHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLL 197
Query: 572 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 751
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 198 LSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIIST 257
Query: 752 IISQERGKKETXGCLGII 805
IS K G LG++
Sbjct: 258 TIS-ANSNKSVFGYLGMV 274
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 223 bits (545), Expect = 4e-57
Identities = 121/213 (56%), Positives = 139/213 (65%)
Frame = -2
Query: 687 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 508
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 507 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 328
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 327 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 148
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 147 L*I*XXPINXPGXPNSARIKRLKDVPMMPDQRP 49
L I PI PG PNSARIK L DVP MP P
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAP 211
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 221 bits (541), Expect = 1e-56
Identities = 117/214 (54%), Positives = 132/214 (61%)
Frame = +2
Query: 47 LGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 226
LG+ SG+IGT+LSLLIR ELG PGS IG Q+YN +VTAHA N
Sbjct: 5 LGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNW 64
Query: 227 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 406
LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G
Sbjct: 65 LVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGP 124
Query: 407 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 586
SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 125 SVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPV 184
Query: 587 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 688
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 185 LAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 220 bits (537), Expect = 4e-56
Identities = 120/258 (46%), Positives = 148/258 (57%), Gaps = 1/258 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPG-SLIGXXQIYNTIVTAHAXXXXXXXXXXXXXX 211
YL F L SG++GT+ S+LIR EL PG I Q+YN+I+T+H
Sbjct: 45 YLIF-ALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIG 103
Query: 212 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 391
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPPLS
Sbjct: 104 GFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQ 163
Query: 392 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 571
+H VDL IF LHL+GISS +L LF AV ITA
Sbjct: 164 SHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLL 223
Query: 572 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 751
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 224 LSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIIST 283
Query: 752 IISQERGKKETXGCLGII 805
+IS K G LG++
Sbjct: 284 VIS-ANSNKNVFGYLGMV 300
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 214 bits (522), Expect = 3e-54
Identities = 118/259 (45%), Positives = 141/259 (54%), Gaps = 2/259 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YLFF G+ +G + LS+L+R EL PG L G YN I T H
Sbjct: 21 YLFF-GVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILF 79
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N VP+++GAPD++FPR+NN F E G GTG TVYPPLSS
Sbjct: 80 GGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSL 139
Query: 389 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 568
+H G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 140 QSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLV 199
Query: 569 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 748
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++S
Sbjct: 200 IVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVS 259
Query: 749 HIISQERGKKETXGCLGII 805
HII+ KK G + +I
Sbjct: 260 HIIA-TFSKKRVFGHVPMI 277
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 212 bits (518), Expect = 8e-54
Identities = 114/222 (51%), Positives = 134/222 (60%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G SG IGT+ S+LIR EL +PGS++G +YN IVTAHA
Sbjct: 20 YLVF-GALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S A
Sbjct: 79 FGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 139 HSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 700
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 199 SLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 205 bits (501), Expect = 9e-52
Identities = 108/251 (43%), Positives = 147/251 (58%), Gaps = 2/251 (0%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAELG--NPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
SG++G SLS+L+R EL NP L+ Q++N ++TAHA N LV
Sbjct: 42 SGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLV 101
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
PL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+
Sbjct: 102 PLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSI 161
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D+AIF+LHL+G+SS + +LPLFV +V ITA A
Sbjct: 162 DMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLA 221
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 772
+T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+ Q
Sbjct: 222 AGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV-QVYA 280
Query: 773 KKETXGCLGII 805
KK G +G+I
Sbjct: 281 KKPIFGKIGMI 291
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 205 bits (501), Expect = 9e-52
Identities = 108/251 (43%), Positives = 147/251 (58%), Gaps = 2/251 (0%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAELG--NPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
SG++G SLS+L+R EL NP L+ Q++N ++TAHA N LV
Sbjct: 42 SGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLV 101
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
PL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+
Sbjct: 102 PLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSI 161
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D+AIF+LHL+G+SS + +LPLFV +V ITA A
Sbjct: 162 DMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLA 221
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 772
+T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+ Q
Sbjct: 222 AGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV-QVYA 280
Query: 773 KKETXGCLGII 805
KK G +G+I
Sbjct: 281 KKPIFGKIGMI 291
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 202 bits (494), Expect = 6e-51
Identities = 117/262 (44%), Positives = 145/262 (55%), Gaps = 5/262 (1%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPG-SLIGXXQIYNTIVTAHAXXXXXXXXXXXXXX 211
YL F L SG++GT+ S+LIR EL PG I Q+YN+I+TAHA
Sbjct: 47 YLIF-ALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIG 105
Query: 212 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPL 379
N L+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPL
Sbjct: 106 GFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPL 165
Query: 380 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 559
S +H G SVDLAIF+LHL+G+SS +L LF
Sbjct: 166 SGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALF-------G 218
Query: 560 FXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 739
+ IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFG
Sbjct: 219 WATWSSRSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFG 278
Query: 740 IISHIISQERGKKETXGCLGII 805
IIS IS K G +G++
Sbjct: 279 IISTTISSS-SNKPIFGYIGMV 299
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 196 bits (479), Expect = 4e-49
Identities = 109/220 (49%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 17 YLIF-AVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMV 75
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS
Sbjct: 76 GGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGL 135
Query: 389 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 568
+H G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 136 QSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILL 195
Query: 569 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 688
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 196 LLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 191 bits (466), Expect = 2e-47
Identities = 106/231 (45%), Positives = 131/231 (56%), Gaps = 2/231 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 727
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 190 bits (463), Expect = 4e-47
Identities = 117/276 (42%), Positives = 149/276 (53%), Gaps = 20/276 (7%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPG----------------SLIGXXQIYNTIVTAH 166
YL F + +GIIG ++S L+RAEL PG +L ++N ++TAH
Sbjct: 43 YLIF-AIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWNVLITAH 101
Query: 167 AXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE-- 340
N VP+++GAPD+AFPR+NNI F V
Sbjct: 102 GLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGSTFVPGG 161
Query: 341 --NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 514
NGAGTG TVY PLS++ G +VD+AI SLH+AG SS +
Sbjct: 162 TGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMT 220
Query: 515 FDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 694
++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP LYQHLF F
Sbjct: 221 LHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWF 280
Query: 695 FGHPEVYILILPGFGIISHIISQERGKKETXGCLGI 802
FGHPEVYI+ILPGFGIIS I+S +K G LG+
Sbjct: 281 FGHPEVYIMILPGFGIISQIVS-TFSRKPVFGYLGM 315
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 184 bits (448), Expect = 2e-45
Identities = 103/205 (50%), Positives = 120/205 (58%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
YL F G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA
Sbjct: 8 YLIF-GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGG 66
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+A
Sbjct: 67 FGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLA 126
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 127 HAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLL 186
Query: 575 XXXXXAGAITILLTDRNLNTSFFDP 649
A IT+LLTDRNLNT+FFDP
Sbjct: 187 SLPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 184 bits (448), Expect = 2e-45
Identities = 95/239 (39%), Positives = 133/239 (55%), Gaps = 2/239 (0%)
Frame = +2
Query: 95 RAELGNPGSLIGX--XQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 268
+A LG L G ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 269 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 448
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 449 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 628
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 629 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGII 805
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISHI++ KK G L ++
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISHIVA-TFSKKPIFGYLPMV 379
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 183 bits (446), Expect = 4e-45
Identities = 101/222 (45%), Positives = 125/222 (56%), Gaps = 2/222 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L L SG+ GT++SL+IR EL PG L G Q++N +V HA
Sbjct: 19 FLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S A
Sbjct: 79 FGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQA 138
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 139 HSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLL 198
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 700
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 199 TLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 178 bits (433), Expect = 2e-43
Identities = 94/254 (37%), Positives = 134/254 (52%), Gaps = 1/254 (0%)
Frame = +2
Query: 44 FLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 223
++GL SG+ G SLS +R EL +PG + +Y++I+T HA N
Sbjct: 23 YMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGN 82
Query: 224 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 403
+PL++ D++ PR+NN+ + G G G T+YPPLS++ G
Sbjct: 83 WFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDG 142
Query: 404 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXX 580
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 143 LPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSV 202
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISHI+
Sbjct: 203 PVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISHILC 262
Query: 761 QERGKKETXGCLGI 802
+ K G +G+
Sbjct: 263 RSSAKLHVFGKIGM 276
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 175 bits (425), Expect = 1e-42
Identities = 99/231 (42%), Positives = 124/231 (53%), Gaps = 2/231 (0%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 394
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQS 143
Query: 395 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 574
H G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 144 HSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLL 203
Query: 575 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 727
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 204 SLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 172 bits (418), Expect = 1e-41
Identities = 93/248 (37%), Positives = 126/248 (50%), Gaps = 2/248 (0%)
Frame = +2
Query: 20 KLLEHYLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXX 193
K + Y LG +G+ G+ LS+LIR EL +PG G Q+YN+++T H
Sbjct: 22 KTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLV 81
Query: 194 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 373
N ++PL+LGAP++AFPR+N + F + G G+ T YP
Sbjct: 82 MPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYP 141
Query: 374 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 553
PLS S+D I LH GI S + DQ+ +FV +
Sbjct: 142 PLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYL 200
Query: 554 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 733
T+F AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP
Sbjct: 201 TSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPV 260
Query: 734 FGIISHII 757
FGIIS +
Sbjct: 261 FGIISEAV 268
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 171 bits (416), Expect = 2e-41
Identities = 92/227 (40%), Positives = 128/227 (56%), Gaps = 4/227 (1%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAELG--NPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
SG++G SLS+L+R EL NP L+ Q++N ++TAHA N LV
Sbjct: 42 SGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLV 101
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
PL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+
Sbjct: 102 PLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSI 161
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D+AIF+LHL+G+SS + +LPLFV +V ITA A
Sbjct: 162 DMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLA 221
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 727
+T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 222 AGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 164 bits (398), Expect = 3e-39
Identities = 93/230 (40%), Positives = 128/230 (55%), Gaps = 2/230 (0%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAELG--NPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
SG++G SLS+L+R EL NP L+ Q++N ++TAHA N LV
Sbjct: 42 SGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLV 101
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
PL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+
Sbjct: 102 PLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSI 161
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D+AIF+LHL+G+SS + +LPLFV +V ITA A
Sbjct: 162 DMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLA 221
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 742
+T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 222 AGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 164 bits (398), Expect = 3e-39
Identities = 90/235 (38%), Positives = 117/235 (49%), Gaps = 2/235 (0%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAELG--NPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
SG +G SL IR EL G L G Q YN ++T+H N +
Sbjct: 27 SGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFI 86
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
P++ G PD+ FPR+NN+ F + E G G G T+YP L H +
Sbjct: 87 PVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLAC 146
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D +F++HL GISS SF LF+ A ITA A
Sbjct: 147 DFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLA 206
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
G +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP FG+IS I+
Sbjct: 207 GGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLISTIV 261
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 2e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +2
Query: 236 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 415
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 416 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 595
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 596 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 703
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 154 bits (374), Expect = 2e-36
Identities = 96/255 (37%), Positives = 120/255 (47%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 220
F GL G IG LSLLIR L +P + +YN +VT H
Sbjct: 118 FVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFG 177
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N +P+ L D+ PR+N++ G G G T+YPPLS
Sbjct: 178 NYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGS 234
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G VD +FSLHLAG+SS S + V A T+
Sbjct: 235 GFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSL 289
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SHI
Sbjct: 290 PVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSHICM 349
Query: 761 QERGKKETXGCLGII 805
+ G G+I
Sbjct: 350 SLSNNDSSFGYYGLI 364
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 148 bits (358), Expect = 2e-34
Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 4/247 (1%)
Frame = +2
Query: 32 HYLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQ---IYNTIVTAHAXXXXXXXXXXX 202
+YL+F L G G LS+++R EL + I + +YN I T H
Sbjct: 20 YYLWFSFL-FGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPG 78
Query: 203 XXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 382
N +P++ G+P++A+PRIN+I E G GTG T+YPPLS
Sbjct: 79 LFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLS 138
Query: 383 SNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 559
+++ +VD+ IF L ++G++S + L + ++ IT+
Sbjct: 139 TSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITS 198
Query: 560 FXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 739
G + +LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP FG
Sbjct: 199 GMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFG 258
Query: 740 IISHIIS 760
+ISH+IS
Sbjct: 259 VISHVIS 265
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 145 bits (352), Expect = 1e-33
Identities = 82/236 (34%), Positives = 117/236 (49%), Gaps = 3/236 (1%)
Frame = +2
Query: 62 GIIGTSLSLLIRAELGNPGSLI---GXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 232
G+IG +S+LIR EL G I +IYN + T H N L
Sbjct: 32 GMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLY 91
Query: 233 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 412
P++LG D+ +PR+N +E G+GTG T+YPPLS+++++ G +
Sbjct: 92 PVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--I 149
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D IF L AGI+S D++ ++ +T+F
Sbjct: 150 DFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVT 209
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPGFGIIS ++S
Sbjct: 210 AVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIISLLLS 265
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 139 bits (336), Expect = 9e-32
Identities = 86/239 (35%), Positives = 116/239 (48%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 220
F LG+ S ++G S SLL R +L P L +YN VT H
Sbjct: 17 FSLGIFSALLGMSFSLLFRLQLAFPSIL--TSDVYNAFVTLHGLVMVFFAAMPTAIGFFA 74
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N L+P PD+ FPR+N + F ++ + A G T YPPLSS
Sbjct: 75 NLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----L 125
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
SV+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 126 SPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSL 183
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S I
Sbjct: 184 PVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFSSSI 242
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 134 bits (325), Expect = 2e-30
Identities = 81/189 (42%), Positives = 99/189 (52%), Gaps = 2/189 (1%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 17 YLIF-AVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMV 75
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS
Sbjct: 76 GGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGL 135
Query: 389 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 568
+H G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 136 QSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILL 195
Query: 569 XXXXXXXAG 595
AG
Sbjct: 196 LLSLPVLAG 204
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 130 bits (313), Expect = 5e-29
Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 6/245 (2%)
Frame = +2
Query: 44 FLGL*SGIIGTSLSLLIRAELGNPGSLI----GXXQIYNTIVTAHAXXXXXXXXXXXXXX 211
++G +GI+G +S+LIR EL G I IYN +T H
Sbjct: 27 YMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIG 86
Query: 212 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSN 388
N L+P+++G +++ PR+N I F ++ +G T+YPPLS+
Sbjct: 87 FYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTR 146
Query: 389 IAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 565
A G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 147 DADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSIL 206
Query: 566 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 745
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+
Sbjct: 207 LIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLT 264
Query: 746 SHIIS 760
S I++
Sbjct: 265 SLILT 269
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 128 bits (310), Expect = 1e-28
Identities = 89/251 (35%), Positives = 123/251 (49%), Gaps = 8/251 (3%)
Frame = +2
Query: 50 GL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 229
GL + +G + +L+R EL +PG + YN+++T+H N L
Sbjct: 105 GLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYL 163
Query: 230 VPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----S 385
+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 164 IPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMG 223
Query: 386 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 565
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 224 NQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGL 281
Query: 566 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 745
AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GII
Sbjct: 282 ILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGII 339
Query: 746 SHIISQERGKK 778
S+I+ + G++
Sbjct: 340 SYILPRFSGRR 350
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 125 bits (302), Expect = 1e-27
Identities = 75/230 (32%), Positives = 105/230 (45%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 247
+G +LL+R +L P + +++N + T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 248 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 427
A D+AFPR+N+ F + + G Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 428 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 607
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 608 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS +I
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMISEVI 277
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 124 bits (298), Expect = 3e-27
Identities = 83/251 (33%), Positives = 112/251 (44%)
Frame = +2
Query: 5 ILQIXKLLEHYLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXX 184
++ I L+ +LFF IG S + +R EL P ++YN ++T H
Sbjct: 29 VIGIQYLVTSFLFFF------IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82
Query: 185 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 364
N L+PL++G D+AFPR+N + F V G T
Sbjct: 83 LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140
Query: 365 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 544
YPPLS G +L I SL L G SS +PLF A
Sbjct: 141 SYPPLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWA 198
Query: 545 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 724
+ T+ A A+ +L D TSFF+P GGGDP++YQHLF F+ HP VYI+I
Sbjct: 199 MLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMI 258
Query: 725 LPGFGIISHII 757
LP FG+IS +I
Sbjct: 259 LPFFGVISEVI 269
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 123 bits (297), Expect = 5e-27
Identities = 83/266 (31%), Positives = 120/266 (45%), Gaps = 19/266 (7%)
Frame = +2
Query: 20 KLLEHYLFFLGL*SGIIGTSLSLLIRAELGNP-------GSLI-GXXQI-----YNTIVT 160
K++ + GL ++G +L++LIR + G P G L+ G + Y I T
Sbjct: 32 KMIAKQFLWAGLLFLLVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFT 91
Query: 161 AHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE 340
H N L+PL++GA D+AFPR+N F
Sbjct: 92 THGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAP 151
Query: 341 NG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 517
G AG G T Y PLS+N+ G L + ++ + G+SS ++
Sbjct: 152 LGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTY 211
Query: 518 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQH 682
+LPL + + +TA A +LL DR+ T FF GGGDPIL+QH
Sbjct: 212 MRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQH 271
Query: 683 LF*FFGHPEVYILILPGFGIISHIIS 760
LF FGHPEVYI+ILP +GI+ ++S
Sbjct: 272 LFWIFGHPEVYIMILPAWGILGDVLS 297
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 123 bits (296), Expect = 6e-27
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 1/233 (0%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G +LLIR EL PG I YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
GA D+AFPR+N + ++ G TG T Y P S AH +V +
Sbjct: 118 GAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVL 173
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
F + G SS ++ ++PLFV A+ T+ G +
Sbjct: 174 FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLL 232
Query: 605 ILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
+L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S +++
Sbjct: 233 VLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMSEVVA 285
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 119 bits (287), Expect = 7e-26
Identities = 79/247 (31%), Positives = 110/247 (44%), Gaps = 1/247 (0%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 247
+G ++LLIRAEL PG + +N + T H N ++PL +G
Sbjct: 55 LGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIG 113
Query: 248 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAI 424
APD+AFPR+N F + GA G T+Y PLS I G D+ I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWI 173
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ GI S + ++P+F + + + A
Sbjct: 174 VGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAAL 233
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 784
+L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S II +K
Sbjct: 234 GVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEII-PVFSRKPM 291
Query: 785 XGCLGII 805
G +G+I
Sbjct: 292 FGYVGLI 298
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 118 bits (285), Expect = 1e-25
Identities = 73/231 (31%), Positives = 104/231 (45%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 247
+G L+LL+R +L P + YN I T H LVPL++G
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDRYNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVG 104
Query: 248 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 427
IAFPR+N + V+ G G Y PLS G+ D+
Sbjct: 105 TRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQ 164
Query: 428 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 607
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 165 MITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTS 224
Query: 608 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S I++
Sbjct: 225 LILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVSSIVA 275
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 118 bits (284), Expect = 2e-25
Identities = 80/248 (32%), Positives = 109/248 (43%)
Frame = +2
Query: 14 IXKLLEHYLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXX 193
I L+ ++FFL IG +LL+R +LG P + +YN + T H
Sbjct: 36 IMYLVSAFVFFL------IGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGL 89
Query: 194 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 373
N +VPL++GA D+AFPR+N + V G Y
Sbjct: 90 MPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYA 148
Query: 374 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 553
PL+ VD I + L G++S + +++PLFV +
Sbjct: 149 PLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLV 208
Query: 554 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 733
AF A LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP
Sbjct: 209 VAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPT 268
Query: 734 FGIISHII 757
GIIS ++
Sbjct: 269 MGIISEVL 276
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 117 bits (282), Expect = 3e-25
Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 2/233 (0%)
Frame = +2
Query: 86 LLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 265
LL+R EL + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 266 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 439
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 440 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 619
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 620 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKK 778
RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S I+ + G+K
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVSLILPKFSGRK 319
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 117 bits (281), Expect = 4e-25
Identities = 69/215 (32%), Positives = 98/215 (45%)
Frame = +2
Query: 113 PGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 292
PG + + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 293 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 472
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 473 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 652
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 653 GGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
GGDP++YQ++F F+ HP VY+ +LP FG S II
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEII 214
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 117 bits (281), Expect = 4e-25
Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 3/233 (1%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G L++++R EL P + + +YN + T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVD 415
GAPD+AFP++N F G A +G YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 416 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 595
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 596 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 754
+LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S +
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSEL 283
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 116 bits (280), Expect = 5e-25
Identities = 69/230 (30%), Positives = 102/230 (44%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 247
+G +LLIR EL PG I YN + T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 248 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 427
A D+AFP++N + F +V+ GA TG T Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 428 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 607
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 608 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+ + FDPA GGDP+L+QH F F+ HP VYI++LP +IS ++
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVISEVV 277
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 114 bits (275), Expect = 2e-24
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 2/239 (0%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
+I SL+LL R +L P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA 421
GA D+AFPR+N + + E+GA G T+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 422 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 601
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 602 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 775
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++ +IS GK
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMADVISTFSGK 272
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 109 bits (262), Expect = 8e-23
Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 1/227 (0%)
Frame = +2
Query: 83 SLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 262
SLLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 46 SLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVA 105
Query: 263 FPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 439
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 106 LPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILL 162
Query: 440 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 619
G SS S ++P++V +V + A ++L +
Sbjct: 163 LGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLE 222
Query: 620 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++ + S
Sbjct: 223 RKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVAS 269
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 109 bits (261), Expect = 1e-22
Identities = 62/231 (26%), Positives = 102/231 (44%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G ++ IR +L P + Q YN ++T H N +VPL +
Sbjct: 40 LVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQI 98
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
GA D++FP +N + F + G T Y LS + +G +D +
Sbjct: 99 GARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFV 156
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
L ++G+ + ++ +LPLF + + +
Sbjct: 157 LGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLA 216
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+++ DR T+FF+P GG+ ++++HLF FGHPEVYILILP FGI S +I
Sbjct: 217 LMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVI 267
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 107 bits (258), Expect = 2e-22
Identities = 82/254 (32%), Positives = 110/254 (43%), Gaps = 16/254 (6%)
Frame = +2
Query: 62 GIIGTSLSLLIRAELGNPG--SLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVP 235
G++ LS L+R +LG PG S I Q Y +T H N L+P
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIP 111
Query: 236 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGR 406
L++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 112 LMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDW 171
Query: 407 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXX 583
+ L + SL L I + +LPL V + T
Sbjct: 172 GIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPA 231
Query: 584 XXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPG 733
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP
Sbjct: 232 LFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPA 290
Query: 734 FGIISHIISQERGK 775
FGI+S +IS K
Sbjct: 291 FGIVSDLISTHARK 304
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 107 bits (256), Expect = 4e-22
Identities = 61/138 (44%), Positives = 75/138 (54%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 220
F G+ SG++GTSLSL+IR ELG PGSL+ Q+YN +VTAH
Sbjct: 4 FIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFG 63
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 64 NWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISA 121
Query: 401 GRSVDLAIFSLHLAGISS 454
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 107 bits (256), Expect = 4e-22
Identities = 68/225 (30%), Positives = 95/225 (42%)
Frame = +2
Query: 86 LLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 265
L++RA+L P + YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 266 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 445
P +NN+ F ++ G T Y PL+SN G + + L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194
Query: 446 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 625
I + + ++P+F IT A+ +L DR
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254
Query: 626 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
FF GG P+L+ +LF +GHPEVYI+ILP FGI S IIS
Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIIS 299
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 105 bits (253), Expect = 1e-21
Identities = 58/111 (52%), Positives = 69/111 (62%)
Frame = +2
Query: 50 GL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 229
G +G+IGT+LSLLIRAELG PG+L+G Q N IVTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWL 83
Query: 230 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 382
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 105 bits (253), Expect = 1e-21
Identities = 66/200 (33%), Positives = 94/200 (47%), Gaps = 6/200 (3%)
Frame = +2
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 397
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 398 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 577
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 578 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 742
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 743 ISHIISQERGKKETXGCLGI 802
+S +I Q ++ G I
Sbjct: 264 VSEVI-QRMARRRAYGYTAI 282
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 103 bits (246), Expect = 7e-21
Identities = 66/231 (28%), Positives = 97/231 (41%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G L++LIRA+L P S + YN + T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
G+ D+AFPR+ F + +G +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 101 bits (242), Expect = 2e-20
Identities = 66/231 (28%), Positives = 98/231 (42%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
I+G L+LL+R +L P + + YN + + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
G D+ FPR+N + ++ G YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S II
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVSSII 280
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 101 bits (242), Expect = 2e-20
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 15/223 (6%)
Frame = +2
Query: 137 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 316
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 317 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 484
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 485 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 649
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 650 ------AGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
AGGG P+L+QHLF F+ HP VYI+ILP G++S I++
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVSDILA 308
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 100 bits (240), Expect = 4e-20
Identities = 68/251 (27%), Positives = 106/251 (42%)
Frame = +2
Query: 23 LLEHYLFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXX 202
L+ ++FFL I +LL+R +L P + + YN + T H
Sbjct: 63 LITGFIFFL------IAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPM 116
Query: 203 XXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 382
L+PL++GA D+ FPR+ + + + G +Y PLS
Sbjct: 117 LEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLS 175
Query: 383 SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 562
++ G S D + + LA I+S S ++P+ + + TAF
Sbjct: 176 TSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAF 235
Query: 563 XXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 742
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+
Sbjct: 236 MIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGM 295
Query: 743 ISHIISQERGK 775
++ ++ GK
Sbjct: 296 VATMLPTFVGK 306
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 99.5 bits (237), Expect = 9e-20
Identities = 64/212 (30%), Positives = 91/212 (42%)
Frame = +2
Query: 143 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 322
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 323 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 502
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 503 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 682
+P+F GA+ +L DR L+ FF GG+ ++Y +
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLN 278
Query: 683 LF*FFGHPEVYILILPGFGIISHIISQERGKK 778
LF +GHPEVYIL+LP FGI S ++S GK+
Sbjct: 279 LFWAWGHPEVYILVLPAFGIFSEVVSTFAGKR 310
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 99.1 bits (236), Expect = 1e-19
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2
Query: 623 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGI 802
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+ GK+E G LG+
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIAHYSGKREPFGYLGM 250
Query: 803 I 805
+
Sbjct: 251 V 251
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 99.1 bits (236), Expect = 1e-19
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 1/231 (0%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGS-LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
+G +L+LLIRAEL PG+ I +N + T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
D+A+P++N I F + T PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWI 149
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++ ++
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMV 260
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 98.7 bits (235), Expect = 1e-19
Identities = 64/231 (27%), Positives = 98/231 (42%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
+IG L++LIRA+L +P S + Y + T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
G+ D+A+PR++ F + +G +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 97.5 bits (232), Expect = 3e-19
Identities = 63/228 (27%), Positives = 97/228 (42%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G +L++R +L P + + Y+++ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
G+ D+AFPR+ + + G Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 748
+L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 96.7 bits (230), Expect = 6e-19
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 4/235 (1%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++G + ++R +L PG + + +N + T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSV 412
GA D+AFPR+N + ++ G G Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 413 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 592
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 593 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS +I
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIISEVI 278
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 96.3 bits (229), Expect = 8e-19
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 2/229 (0%)
Frame = +2
Query: 80 LSLLIRAELGNPGSLIGXX-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 256
+++LIR EL G I +YNT + H N +PL++GA D
Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94
Query: 257 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 436
+AFPR+N + + + T YPP S I H + FS+
Sbjct: 95 VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151
Query: 437 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 613
L G +S +++L +FV A + AF G A+T+L
Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210
Query: 614 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++ I++
Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMVFEIVA 259
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 95.9 bits (228), Expect = 1e-18
Identities = 81/282 (28%), Positives = 118/282 (41%), Gaps = 30/282 (10%)
Frame = +2
Query: 20 KLLEHYLFFLGL*SGIIGTSLSLLIRAELGNP-----------GSLIGXX-----QIYNT 151
K++ F G+ +IG +SL+ R +LG P G I + Y
Sbjct: 45 KVIAKQFLFTGIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGKLEPEFYLA 104
Query: 152 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 331
+VT H N L+PL +GA D+A +N + +
Sbjct: 105 LVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASI 164
Query: 332 IVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 499
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 165 FLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITTVINLR 224
Query: 500 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG---- 655
SF +LPL + A ITA A +L+ DR+L TSFF AG
Sbjct: 225 VKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALH 284
Query: 656 --GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 775
GG P+L+QHLF F GHPEVYI+++P GI S +I+ K
Sbjct: 285 HQGGSPVLFQHLFWFLGHPEVYIVLIPALGITSEVIATNARK 326
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 95.9 bits (228), Expect = 1e-18
Identities = 63/212 (29%), Positives = 88/212 (41%)
Frame = +2
Query: 143 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 322
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 323 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 502
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 503 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 682
+P+F A+ +L DR L+ F GG+P++Y +
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVN 277
Query: 683 LF*FFGHPEVYILILPGFGIISHIISQERGKK 778
LF +GHPEVYILILP FG+ S + S GK+
Sbjct: 278 LFWAWGHPEVYILILPAFGVFSEVTSTFAGKR 309
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 93.9 bits (223), Expect = 4e-18
Identities = 72/208 (34%), Positives = 84/208 (40%)
Frame = +2
Query: 71 GTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 250
G L R L G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 251 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 430
P +A PR+ N+ F + G G VYPP SS +AH +VDL IF
Sbjct: 80 PXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFX 139
Query: 431 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 610
LHLAGISS ++ LF A AIT+L
Sbjct: 140 LHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITML 199
Query: 611 LTDRNLNTSFFDPAGGGDPILYQHLF*F 694
R N SFF P G P + F F
Sbjct: 200 XXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 93.1 bits (221), Expect = 7e-18
Identities = 62/231 (26%), Positives = 93/231 (40%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
I+ L L++R +L P + + YN I T H L+P +L
Sbjct: 55 ILAGILGLIMRTQLAVPENDLVGQDFYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQML 113
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
A D+ FPR++ + G +YPPL+ G + D +
Sbjct: 114 AARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWL 173
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ IS+ S ++P+F A+ I A A
Sbjct: 174 LGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATM 233
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 234 LLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVSMIV 284
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 90.6 bits (215), Expect = 4e-17
Identities = 73/253 (28%), Positives = 108/253 (42%), Gaps = 1/253 (0%)
Frame = +2
Query: 47 LGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 226
LG+ + IIG+ + LIR +L + Y+ VT H N
Sbjct: 26 LGIVALIIGSVNAALIRDQLSFNN--LNAVDYYDA-VTLHGIFMIFFVVMPLSTGFA-NY 81
Query: 227 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAHRG 403
LVP ++GA D+ +P+IN + F ++ G +Y PLS + G
Sbjct: 82 LVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVNYG 140
Query: 404 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 583
+L +L L+G+SS + ++PLFV TA
Sbjct: 141 LGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIAMP 198
Query: 584 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQ 763
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S ++
Sbjct: 199 SLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVSELL-P 257
Query: 764 ERGKKETXGCLGI 802
+ ++E G I
Sbjct: 258 KMARREIFGYTAI 270
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 89.8 bits (213), Expect = 7e-17
Identities = 59/185 (31%), Positives = 79/185 (42%)
Frame = +2
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S I S
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYSEIFS 323
Query: 761 QERGK 775
GK
Sbjct: 324 TFSGK 328
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 88.2 bits (209), Expect = 2e-16
Identities = 67/233 (28%), Positives = 98/233 (42%), Gaps = 16/233 (6%)
Frame = +2
Query: 107 GNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 286
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 287 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 451
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 452 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 631
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 632 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI+SHI+
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 87.0 bits (206), Expect = 5e-16
Identities = 54/180 (30%), Positives = 80/180 (44%)
Frame = +2
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI S IIS
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFSEIIS 298
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 85.4 bits (202), Expect = 1e-15
Identities = 58/231 (25%), Positives = 88/231 (38%)
Frame = +2
Query: 68 IGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 247
+G L+L IR +L P + YN ++T HA N +PL LG
Sbjct: 49 LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLG 108
Query: 248 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 427
D+A PR+N G T Y PL+ + G SV +
Sbjct: 109 VRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAV 168
Query: 428 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 607
L+ G+ S ++P+F ++ T+ A +
Sbjct: 169 ILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALL 226
Query: 608 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
+ L S F+P GG P+LYQ F F+ HP VY+++LP GI + + S
Sbjct: 227 TYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGIGAEVAS 277
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 85.4 bits (202), Expect = 1e-15
Identities = 58/231 (25%), Positives = 95/231 (41%)
Frame = +2
Query: 65 IIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 244
++ ++L++R +L + +YN + T H L+P +L
Sbjct: 114 VLAGIVALMMRTQLAVAENDFIGPALYNQLFTMHGTVMMFLFAVPAVEAMGIL-LLPNML 172
Query: 245 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 424
GA D+ FPR++ F V G + PPL++ G + D +
Sbjct: 173 GARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGYNADFWL 232
Query: 425 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 604
+ IS+ + ++P+F A+ + A A
Sbjct: 233 LGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPAVILATA 292
Query: 605 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 293 LLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVSMIV 343
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 85.0 bits (201), Expect = 2e-15
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Frame = +2
Query: 356 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 526
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 527 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 706
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 707 EVYILILPGFGIISHIISQERGKK 778
EVY+LI+P FG I+ I+ ++
Sbjct: 403 EVYVLIIPTFGFINMIVPHNNTRR 426
Score = 49.6 bits (113), Expect = 9e-05
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +2
Query: 32 HYLFFLGL*SGIIGTSLSLLIRAELGNPGSLI--GXXQIYNTIVTAHAXXXXXXXXXXXX 205
+YL+F + +G+ G +L+ +IR EL +P S G Y +VTAH
Sbjct: 66 NYLYF-SMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPIL 124
Query: 206 XXXXXN*LVPLILGAPDIAFPRINNIRF 289
N L+P +G+ D+A+PR+N+I F
Sbjct: 125 FGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 84.6 bits (200), Expect = 3e-15
Identities = 52/121 (42%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 17 YLIF-AVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMV 75
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 388
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV LS
Sbjct: 76 GGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQI 135
Query: 389 I 391
I
Sbjct: 136 I 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 82.2 bits (194), Expect = 1e-14
Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLI--GXXQIYNTIVTAHAXXXXXXXXXXXXX 208
YL F G +G++GT S+LIR EL PG+ I G Q+YN ++TAHA
Sbjct: 21 YLIF-GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMI 79
Query: 209 XXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 367
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 80 GGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 81.8 bits (193), Expect = 2e-14
Identities = 55/226 (24%), Positives = 90/226 (39%)
Frame = +2
Query: 80 LSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 259
L++L+R +L PG+ +N T H L+P +LGA D+
Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136
Query: 260 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 439
FPR++ + + + +G +YPPL++ G D+ + L
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194
Query: 440 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 619
++S + +PL+ V + + +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254
Query: 620 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
R + FFDP GGDP+L+QHLF FGHPEVYI+ LP + + I+
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIV 300
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 81.4 bits (192), Expect = 2e-14
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 14/222 (6%)
Frame = +2
Query: 137 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 316
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 317 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 487
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 488 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 655
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 656 -------GGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
GG P+L+QHLF F+ HP VYI++LP G++S ++S
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLS 311
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 236 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 415
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 416 LAIFS 430
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 5e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1
Query: 535 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 702
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 80.6 bits (190), Expect = 4e-14
Identities = 49/119 (41%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 391
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 79.4 bits (187), Expect = 1e-13
Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 13/260 (5%)
Frame = +2
Query: 38 LFFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHAXXXXXXXXXXXXXXXX 217
LFFL + G L+LL R EL + G+ + YN V+ H
Sbjct: 34 LFFL-----VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA 88
Query: 218 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--I 391
N LVPL +GA D+AFPR+N + + G T+Y PL++ I
Sbjct: 89 -NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYI 147
Query: 392 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 571
G + +L + + +P+F ++ +T +
Sbjct: 148 PGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMML 207
Query: 572 XXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYI 718
A+ IL +D L T++F D G +L+ HLF FFGHPEVYI
Sbjct: 208 FAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYI 267
Query: 719 LILPGFGIISHIISQERGKK 778
+ P G+++ G++
Sbjct: 268 VFFPALGVMAECFQTFTGRR 287
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 77.4 bits (182), Expect = 4e-13
Identities = 50/179 (27%), Positives = 76/179 (42%)
Frame = +2
Query: 221 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 400
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 581 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS II
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII 321
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 76.2 bits (179), Expect = 9e-13
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 1/179 (0%)
Frame = +2
Query: 227 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 403
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 404 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 583
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 584 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 760
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G + +S
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDYLS 288
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 73.7 bits (173), Expect = 5e-12
Identities = 33/45 (73%), Positives = 34/45 (75%)
Frame = +1
Query: 622 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 756
K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSYY
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYY 51
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 374 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 553
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 554 TAFXXXXXXXXXAGAITILLTDR 622
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 208 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 333
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHAXXXXXXXXXXXXXXX 214
F + G+ GT++S++IR EL PG+ L G Q++N +V HA
Sbjct: 19 FIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 215 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 367
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 79 FGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 62.9 bits (146), Expect = 9e-09
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 692 FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGII 805
FFGHPEVYILILPGFG+ISHI++ GKKE G +G++
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMV 39
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 332 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 454
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +2
Query: 518 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 697
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 698 GHPEVYILIL 727
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2
Query: 707 EVYILILPGFGIISHIISQERGKKETXGCLGII 805
EVYILILPGFG+ISHIISQE GKKE G LG+I
Sbjct: 155 EVYILILPGFGMISHIISQESGKKEAFGTLGMI 187
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGSLIGXXQIYNTIVTAHA 169
F + SG+IG+S+S+LIR EL GS++ QIYNT+VT+HA
Sbjct: 4 FIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 40.3 bits (90), Expect = 0.055
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 401 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 580
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 581 XXXAGAITILLTDRNLNT 634
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 49.2 bits (112), Expect = 1e-04
Identities = 41/177 (23%), Positives = 65/177 (36%)
Frame = +2
Query: 227 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 406
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 407 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 586
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 587 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 757
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I I+
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL 351
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 538 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 690
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 47.2 bits (107), Expect = 5e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 692 FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGII 805
FFGHPEVY+LILP FGI+SHI G G++
Sbjct: 1 FFGHPEVYVLILPVFGIVSHICMTFTNNDSLFGYYGLV 38
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 5e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +1
Query: 214 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 393
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 394 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 573
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 574 XTTCFSWSYYNIINRSKLKY 633
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 44.8 bits (101), Expect = 0.003
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTAHA 169
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 43.6 bits (98), Expect = 0.006
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 679 TFILIFWTS*SLYFNFTRIWYNFSYY 756
+ ++IFW+S SLYFN IWYNF YY
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYY 27
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 39.9 bits (89), Expect = 0.073
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIV 157
F L + SG+ GT++SL+IR EL PGS L G Q++N +V
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 37.9 bits (84), Expect = 0.30
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 41 FFLGL*SGIIGTSLSLLIRAELGNPGS--LIGXXQIYNTIVTA 163
F L + SG+ GT++SL+IR EL PGS L G Q++N T+
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 36.7 bits (81), Expect = 0.68
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLI--GXXQIYN 148
YL F G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 21 YLIF-GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 36.7 bits (81), Expect = 0.68
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 35 YLFFLGL*SGIIGTSLSLLIRAELGNPGSLI--GXXQIYN 148
YL F G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 21 YLIF-GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 656 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 772
G DP+L + LF F GHP VY +LP + + + Q+ G
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNFVPQQAG 262
>UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing
uncharacterized repeats-like precursor; n=3;
Nitrosospira multiformis ATCC 25196|Rep: Integral
membrane proteins containing uncharacterized
repeats-like precursor - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 433
Score = 34.7 bits (76), Expect = 2.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 704 PEVYILILPGFGIISHIISQERGKK 778
PE+Y LILPG G++ I Q++ KK
Sbjct: 407 PEIYALILPGLGLVGFIARQKKAKK 431
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 34.7 bits (76), Expect = 2.8
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 662 DPILYQHLF*FFGHPEVYILILPGFGIISHI---ISQERGK 775
+P+L + LF FFGHP VY +LP + + I I E+GK
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKGK 249
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 34.7 bits (76), Expect = 2.8
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 59 SGIIGTSLSLLIRAEL--GNPGSLIGXXQIYNTIVTAHA 169
+ ++GT +S++IR EL GN G Q YN ++T HA
Sbjct: 3 ASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.9 bits (74), Expect = 4.8
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +1
Query: 550 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 729
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 730 RI 735
I
Sbjct: 154 SI 155
>UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Cytochrome aa3 subunit
1) (Oxidase aa(3) subunit 1); n=5; Sulfolobaceae|Rep:
Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3)
subunit 1) - Sulfolobus acidocaldarius
Length = 517
Score = 33.9 bits (74), Expect = 4.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 668 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 775
+L+ LF F+GHP VY + P FG + + I Q G+
Sbjct: 224 LLWAILFWFYGHPVVYYVPFPLFGALYYYIPQYAGR 259
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,279,656
Number of Sequences: 1657284
Number of extensions: 10364522
Number of successful extensions: 22661
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 20887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22355
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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