Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A01
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 426 SPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISG 560
           +P+S    RVL      F+++I+  +T+N  AF +  +    ++G
Sbjct: 630 TPRS-FSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTG 673


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 156 IGENLHNYSSLNSFFYARE 100
           +GENLHN+ S    F   E
Sbjct: 355 VGENLHNHQSFGMDFSLNE 373


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   TLVDAHSIFLFFRTFRLLAVFINFIELRGGVREHKKM 119
           T V    IF++     L+ + + +  L   +R H+KM
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKM 253


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   TLVDAHSIFLFFRTFRLLAVFINFIELRGGVREHKKM 119
           T V    IF++     L+ + + +  L   +R H+KM
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKM 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,765
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)