Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_P20
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 32 0.44
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 31 1.0
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 31 1.0
08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414... 31 1.0
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 30 1.8
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 29 3.1
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 3.1
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 29 3.1
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073 29 4.1
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 28 5.4
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 28 7.1
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 27 9.4
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 27 9.4
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 27 9.4
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 27 9.4
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N RILSLSF+ + N K +LY+ IF
Sbjct: 402 NMNRILSLSFHDLPNHLKTCLLYLSIF 428
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILS +Y++ + K +LYI IF
Sbjct: 400 NIRRILSFCYYHLPSHLKTCLLYISIF 426
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 416 FKRILSLSFYYINNECKDTILYIKIF 339
F+RIL LSFY + ++ K LY+ IF
Sbjct: 349 FRRILMLSFYDLPHDLKTCFLYLSIF 374
>08_01_0470 -
4140669-4140728,4142004-4142270,4142526-4144557,
4144763-4145550
Length = 1048
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILS S+Y + + K ILYI IF
Sbjct: 392 NTRRILSFSYYDLPSHLKPCILYISIF 418
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N KRILS S+Y + + K+ +LY+ +F
Sbjct: 681 NTKRILSFSYYDLPSHLKNCLLYLSMF 707
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 428 ATWNFKRILSLSFYYINNECKDTILYIKIF 339
A N ++ILS S+Y++ + K +LY+ I+
Sbjct: 431 AVQNMRKILSFSYYHLPSYLKTCMLYLSIY 460
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILSLS+Y + K +LY+ IF
Sbjct: 414 NTRRILSLSYYDLPLHLKPCLLYLSIF 440
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILSLS+Y + K +LY+ IF
Sbjct: 423 NTRRILSLSYYDLPLHLKPCLLYLSIF 449
>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
Length = 900
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILS S+Y + + K +LY+ IF
Sbjct: 353 NTRRILSFSYYDLPSHLKACLLYLSIF 379
>11_06_0227 +
21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 428 ATWNFKRILSLSFYYINNECKDTILYIKIF 339
A N ++ILS S+Y++ + K +LY+ I+
Sbjct: 405 AVQNTRKILSFSYYHLPSYLKTCMLYLSIY 434
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 428 ATWNFKRILSLSFYYINNECKDTILYIKIF 339
A N ++ILS S+Y++ K +LY+ I+
Sbjct: 414 AVQNTRKILSFSYYHLPTYLKTCMLYLSIY 443
>11_01_0179 -
1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N +RILS S+Y + + K +LY+ +F
Sbjct: 458 NTRRILSFSYYDLPSHLKACMLYLSLF 484
>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N ++ILSLS++ + + + +LY+ IF
Sbjct: 319 NMRKILSLSYHNLPSHLRTCLLYLSIF 345
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 419 NFKRILSLSFYYINNECKDTILYIKIF 339
N ++ILS SFY + + K+ +L+++IF
Sbjct: 396 NTRKILSFSFYDMPSYLKNCLLHLRIF 422
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 425 TWNFKRILSLSFYYINNECKDTILYIKI 342
++NF S+SF Y++N+ + T+ Y I
Sbjct: 225 SYNFTESESMSFLYVSNDARTTLSYSSI 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,798
Number of Sequences: 37544
Number of extensions: 289136
Number of successful extensions: 469
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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