Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P20
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    31   0.69 
Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 270 NSLVIFIILCQIDHIFNHV*KFIIYFSKIHILYNXLQ 160
           NS +I + LC I  +F    + +IYF+ + ++++ L+
Sbjct: 22  NSFLILLTLCYIKEVFGAYKRMVIYFAALGMIFSGLE 58


>Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical
           protein Y48E1B.11 protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 399 RQYSFKIPCGKFGANIFYS*ISNASAVVRSP--CPIECILELVDVYL 533
           ++Y+F I   + GAN+ +  +     ++ SP     E   +LVD YL
Sbjct: 57  KKYNFNIQTAQLGANVLFGGVQQFGILIASPEDSQTETFRKLVDFYL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,899
Number of Sequences: 27780
Number of extensions: 286866
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)