Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P20
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   4.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 459 ISNASAVVRSPCPIECILELVDVYLRLIFKLQFHSKVRY 575
           ++  S  VRS  P    ++ +D+YL + F   F + + Y
Sbjct: 284 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEY 322


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 436 PNLPHGILNEYCLFHSII*IMSAKIQYYT*KYFTS-GF*DLYFN 308
           P +P+    ++ +F S   I +  IQ+    YFT  G  + YF+
Sbjct: 268 PKVPYPTALDFFVFLSFAFIFATIIQFAVVHYFTKYGSGECYFS 311


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 27  VYIKFNLVLKLFKNFKS 77
           +YI+FN ++K F  +K+
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 27  VYIKFNLVLKLFKNFKS 77
           +YI+FN ++K F  +K+
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 109 CTPAYLLFIW 138
           C P Y+++IW
Sbjct: 542 CIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 109 CTPAYLLFIW 138
           C P Y+++IW
Sbjct: 595 CIPGYMIYIW 604


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 275 LDYKNGQATAPI 310
           L+Y+NG+ T P+
Sbjct: 574 LEYRNGEVTTPL 585


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 397 RDNIRLKFHVASSGQTFSIHKSLTPVP 477
           R N++LK H+A       + + + P+P
Sbjct: 20  RQNMKLKRHLAQDKVKVRVAEEVDPLP 46


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 415  KFHVASSGQTFSIHKSLTPVP*FAPPALLS 504
            K  +   G+   IH+   P+P   PP ++S
Sbjct: 1091 KRRMVKYGKLVMIHEENAPLPPALPPQVVS 1120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,307
Number of Sequences: 438
Number of extensions: 4298
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)