Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P18
         (465 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q186V1 Cluster: Two-component sensor histidine kinase; ...    33   2.3  
UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4; ...    33   3.1  
UniRef50_A0CC03 Cluster: Chromosome undetermined scaffold_166, w...    32   5.4  
UniRef50_A7PM44 Cluster: Chromosome chr14 scaffold_21, whole gen...    32   7.1  

>UniRef50_Q186V1 Cluster: Two-component sensor histidine kinase;
           n=1; Clostridium difficile 630|Rep: Two-component sensor
           histidine kinase - Clostridium difficile (strain 630)
          Length = 452

 Score = 33.5 bits (73), Expect = 2.3
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -3

Query: 385 TNLXISLCFFFRFLIRTVLI----FFLVILFGSYHCKFFCFFLVDLI 257
           ++L +   FFF F++  +L+    ++ +I F +++ KF+CF L  +I
Sbjct: 7   SDLFLKYSFFFSFIVYRILMVIVQYYFLINFTNFNSKFWCFILYSII 53


>UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1541

 Score = 33.1 bits (72), Expect = 3.1
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -3

Query: 430 LILRIFNEFFAXXXQTNLXISLCFFFRFLIRTVLIFFLVILFGSYH--CKFFCFF 272
           ++  +   FF       + IS  FFF FL+   L F ++ILF       KF  FF
Sbjct: 34  ILFNLIYSFFFFFIFIFIFISFFFFFFFLLYATLFFLIIILFNKMQIPTKFLVFF 88


>UniRef50_A0CC03 Cluster: Chromosome undetermined scaffold_166,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_166,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 822

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
 Frame = -3

Query: 412 NEFFAXXXQTNLXISLCFFFRFLIRTVLIFFLVILFGSYHCKFF---CFFLVDLI*VTQL 242
           N +F       + ISL F    +IR  +I+  +I+F  Y  + F     FLV L+ +   
Sbjct: 193 NNYFYIVIILLIDISLQFNLAIIIRGQIIYDRIIIFKKYISRQFFEDSIFLVSLVLIIHT 252

Query: 241 KL**YIIMFYLTK*N---KIVRK*YFNYK-SFQCPSKWSIHGVLLIINILLIKYVQSKWF 74
               ++I+FY+       KI+RK    +  S +      +  +L  IN LL  ++   W 
Sbjct: 253 SQLIFVIIFYVNGIGMLVKIIRKLEDTFDLSVKTTELLKLWKLLFFIN-LLAHFIACIWH 311

Query: 73  AINL 62
            I L
Sbjct: 312 YIGL 315


>UniRef50_A7PM44 Cluster: Chromosome chr14 scaffold_21, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_21, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 218

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 346 LIRTVLIFFLVILF-GSYHCKFFCFFLVD 263
           ++ ++L+FF  + F G +HCKF  FFL++
Sbjct: 21  ILSSLLLFFFSLFFQGKWHCKFVDFFLLE 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,703,654
Number of Sequences: 1657284
Number of extensions: 4577410
Number of successful extensions: 8761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8720
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)