Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P18
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.35 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   1.1  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   2.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   4.3  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = -3

Query: 175 FNYKSFQCPSKWSIHGVLLIINILLIKYVQSKWFAINLLV*ISCS*NIECQL 20
           +NY SFQ  +  S+ G++ +  +L+  Y+ +++     ++ + C  NI C +
Sbjct: 312 YNYSSFQAGNFLSLAGIINVPLLLIFSYL-TRYLTDRDIILLGCCLNIVCMV 362


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 325 FFLVILFGSYHCKFFCFF 272
           F+L  L G+  C FFCFF
Sbjct: 28  FWLAFLLGASACVFFCFF 45


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 388 QTNLXISLCFFFRFLIRTVLIFFLVILFGSYHCKFF 281
           +  + + +CFF  F++R   I    I  G + C FF
Sbjct: 282 EAKIPLIICFFALFVVRFFAITIQSIHLGLWFCFFF 317


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -3

Query: 358 FFRFLIRTVLIFFLVILFGSYHCKFFCFFLVDLI*VTQLKL**YIIMFYLTK*NKIVRK* 179
           F+ F   T+++   V LFG     FF  +  DL+ V  +    Y    Y  +   I +  
Sbjct: 6   FYFFFFLTLILSATVYLFGGPMMLFFINYKTDLLKVDDV----YNHEIYSNQSAAIPKII 61

Query: 178 YFNYKSFQCPSKW 140
           +  +K+ + P KW
Sbjct: 62  HQTWKTNEIPEKW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,986
Number of Sequences: 5004
Number of extensions: 22168
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)