Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P14
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0725 + 35759792-35760358                                         55   4e-08
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    27   9.9  

>03_06_0725 + 35759792-35760358
          Length = 188

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = -1

Query: 654 RNEPNHGTMTN-PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEV 478
           R   NHG + +   +G A+F+    T  + PL+    Y VPFLL+ PG G+ V GE+Y V
Sbjct: 36  RGFSNHGLLQDLARDGDASFVGAATTAPRLPLVCGP-YRVPFLLNLPGAGHRVSGELYAV 94

Query: 477 DDKMLSNLDILE 442
             + L  LD LE
Sbjct: 95  TPRGLDRLDELE 106


>08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,
            4080757-4081589
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 418  SDVTIRVIFQNIKIRQHFIVDFIYFTFHIISSSGTVQ*KWYIVFCCYDQRILFFCH 585
            + V  +V+FQN+ +R+    D  YF FH +  +  V+ K+ +   C D R   F +
Sbjct: 961  TSVNPKVVFQNVNVRE-MKDDDGYFDFHWLLRNPWVK-KFGVSIFCEDLRFRSFAY 1014


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,163
Number of Sequences: 37544
Number of extensions: 263433
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)