Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P13
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    29   0.96 
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   2.2  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   2.9  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.1  
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    26   6.7  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.9  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 336 FITHYYFDILNVYYYFSMLKCGFF 265
           FI+HY F  LNVY  F  L C  +
Sbjct: 775 FISHYDFSSLNVYASFQKLCCDLY 798


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 372 TLIKCLAISLIIFIT-----HYYFDILNVYYYFSMLKCGF 268
           T+  C A+S + +IT     +YY+  L V +Y S+   G+
Sbjct: 367 TIGACCAMSFLFYITFYCWDNYYYSFLQVVHYTSITAAGY 406


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = -1

Query: 396 NVTNIYILTLI--KCLAISLIIFITHYYFDILNV-----YYYFSMLKCG 271
           N  N+ IL +I  KC    +IIF T +Y D ++V     Y YF+ +  G
Sbjct: 8   NPNNLKILEVINEKCFDPEIIIFPTSFYKDTISVGPLAQYAYFNQVCVG 56


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 367 HKMFSYFIDHFHYTLLFRHTKCLLLFFDVKVRLF 266
           HK   Y  +  + TL FR  K  LLF D K R+F
Sbjct: 128 HKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMF 161


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/67 (17%), Positives = 27/67 (40%)
 Frame = +2

Query: 86  MPRSTDKLSQIAEAYKFNQNMKKKMQSKFDLTEKFQFQIISFIFNLSIIYIKKLNRIRVI 265
           MPR    + Q  E  +       +++   +   KF+ +   +++ L +   KK  ++R  
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 266 KKPHFNI 286
             P   +
Sbjct: 61  LPPDLTV 67


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 ISLIIFITHYYFDILNVYYYFSMLKCGF 268
           I  I+ I  Y   ++ VY+ FS++K  F
Sbjct: 113 IETIVLIFTYVMTVIIVYFSFSLIKLAF 140


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 ISLIIFITHYYFDILNVYYYFSMLKCGF 268
           I  I+ I  Y   ++ VY+ FS++K  F
Sbjct: 113 IETIVLIFTYVMTVIIVYFSFSLIKLAF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,209
Number of Sequences: 5004
Number of extensions: 51130
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)