Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P13
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 143 NMKKKMQSKFDLTEKFQFQIISFIFNLSIIYIKKLNRIRVI 265
           N  + + +K  LTEKFQ  +IS +F L  + +   + +  I
Sbjct: 397 NFPRFLNTKIQLTEKFQLYLISALFVLYFVGLALFSMVYAI 437


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 143 NMKKKMQSKFDLTEKFQFQIISFIFNLSIIYIKKLNRIRVI 265
           N  + + +K  LTEKFQ  +IS +F L  + +   + +  I
Sbjct: 418 NFPRFLNTKIQLTEKFQLYLISALFVLYFVGLALFSMVYAI 458


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 143 NMKKKMQSKFDLTEKFQFQIISFIFNLSIIYIKKLNRIRVI 265
           N  + + +K  LTEKFQ  +IS +F L  + +   + +  I
Sbjct: 442 NFPRFLNTKIQLTEKFQLYLISALFVLYFVGLALFSMVYAI 482


>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 375 LTLIKCLAISLIIFITHYYFDILNVYYYFSMLKCGFFI 262
           ++++    + +IIF+TH+ F ++ ++  F ML    FI
Sbjct: 99  MSILAIFLLPVIIFLTHFNFWVIALFIIFEMLSFLSFI 136


>Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical
           protein H12I19.2 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 294 YFSMLKCGFFITRIRFSFLMYIMLKLKMNE 205
           ++ +L  GFF+  + F F MY+  K K N+
Sbjct: 24  FYGILITGFFLNLLIFPFYMYVYKKNKEND 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,769
Number of Sequences: 27780
Number of extensions: 281080
Number of successful extensions: 931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)