Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_P11
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 2.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.2
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 4.3
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 4.3
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 24 5.6
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 24 5.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 24 5.6
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 24 7.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 23 9.8
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 2.4
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +3
Query: 63 TLFIHSHTMSNIVGVFAFCYFFFLSSYSTPRASDTICLSLVKIPSNCSVNASKEKFVSNL 242
T+ HS T + + F L + TP A + S+ + P+N S A + +
Sbjct: 235 TVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAAQAPLIRSVSEYPANVSPPAQSLQLPKST 294
Query: 243 LSPA*PNLSIRS 278
+PA +LSI S
Sbjct: 295 SNPADLHLSIAS 306
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 66 LFIHSHTMSNIVGVFAFCYFFFLSSY 143
+FIH + SN+V F F ++F L S+
Sbjct: 95 IFIHPYD-SNVVPFFCFFFYFSLFSF 119
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 96 IVGVFAFCYFFFLSSYSTPRASDTICLSLVKI 191
IVG F F+ S++TP ++ T+ ++ K+
Sbjct: 125 IVGFSLNSVFTFIDSFATPSSNSTVTEAMTKM 156
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 4.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 23 EIFSSQHLNYTTIYFVHTLSYN 88
E F S +L+Y+ ++F+H L ++
Sbjct: 185 ESFISMNLSYSKVFFLHLLQHS 206
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 4.3
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +3
Query: 72 IHSHTMSNIVGVFAFCYFFFLSSYSTPRASDTIC----LSLVKIPSNCSVNASK-EKFVS 236
+ S +++++ + A ++ F +ST R +DT L IP + S ++F+S
Sbjct: 1 MRSRSVASLGVLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQFIS 60
Query: 237 NLLSPA*PNLSIRSGFKTN 293
PNL SG N
Sbjct: 61 ESYDSLVPNLDKWSGHNLN 79
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 66 LFIHSHTMSNIVGVFAFCYFF 128
L ++SHT+++ + V+ FC F
Sbjct: 329 LILNSHTLASSLAVYQFCLDF 349
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 24.2 bits (50), Expect = 5.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 DIQFTTFELYN-NLLCSYTLIQCQTLLECLHFVIFSSSLHIQRLEPQILFVF 177
DI+ F++ + + S L Q +L+ +V +H+ L+PQ+L +F
Sbjct: 586 DIEVVVFDMVGVSSIDSSALFAFQRILK--EYVEHQVEVHLVSLDPQVLHIF 635
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 FLSSYST-PRASDTICLSLVKIPSNCSVNASKEKFVSNLLS 248
FLSS + + S+++CL P +V + EK+ ++ S
Sbjct: 24 FLSSQADLKKYSESLCLPKTSFPIKPNVKGNNEKYFKSITS 64
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 310 ATAMSKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQLDGILTRERQIVSEAR 152
A + +++ PD +FG+ L+R E + + +E +G+L E + AR
Sbjct: 633 AERLLRVMTTPDAEAKFGELILRRPEFGYVLSSLSE--NGVLYLENKSSRNAR 683
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 55 NNLLCSYTLIQCQTLLECLHFVIFSSSLHIQRLEPQILF 171
NN+L + + L+E + + + SLH + E +IL+
Sbjct: 364 NNVLITLFITSIMNLVEKVLMQLIAMSLHRREYESRILY 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,440
Number of Sequences: 5004
Number of extensions: 20527
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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