Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P11
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   7.2  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   9.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   9.5  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 RERQIVSEARGVEYEERKKK 122
           RE  +V + R  EYE+ K+K
Sbjct: 40  REAWLVQQEREQEYEKLKRK 59


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 64  LCSYTLIQCQTLLECLHFVIFSSSLHIQRLEPQILFVFLLL 186
           LCS  L+        L  +I  +SL I  L   +LF  +L+
Sbjct: 283 LCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILV 323


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 38  QHLNYTTIYFVHT 76
           +H NY  + F+H+
Sbjct: 163 KHFNYMKVIFIHS 175


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 174 LSLVKIPSNCSVNAS 218
           L  ++IP N +VNAS
Sbjct: 169 LKQIEIPHNIAVNAS 183


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 FSSSLHIQRLEPQILF 171
           FSSSLH+   + +I F
Sbjct: 42  FSSSLHLTETQVKIWF 57


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 83  MRVYEQSKLLYSSNV 39
           +R+Y+  ++LYSS +
Sbjct: 110 VRLYQDGRVLYSSRL 124


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 49  LYNNLLCSYTLIQCQTLLECL 111
           L+   + SY +++C  +  CL
Sbjct: 8   LFTLCIVSYMMVRCDDITLCL 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,814
Number of Sequences: 438
Number of extensions: 1488
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)