Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_P10
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 313 2e-86
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 313 2e-86
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 313 2e-86
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 54 2e-08
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 0.95
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.2
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 8.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 313 bits (768), Expect = 2e-86
Identities = 137/201 (68%), Positives = 166/201 (82%)
Frame = -2
Query: 623 LRSLDYXERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV 444
LR+LD+ ERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFV
Sbjct: 28 LRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFV 87
Query: 443 YCGKXATLEVGNVMPVGAMPEGTIVCNLEEXMGDRXRXAXASGNFATVIGHNPDAKRTRV 264
YCGK A L VGNV+PVG MPEGTI+ N+EE GDR +SGN+ ++GH+ D +TRV
Sbjct: 88 YCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRV 147
Query: 263 KXPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 84
K PSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+
Sbjct: 148 KLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVD 207
Query: 83 HPLGAGNHQHIGKASTVQERN 21
HP G GNHQH+G ++TV ++
Sbjct: 208 HPHGGGNHQHVGHSTTVPRQS 228
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 313 bits (768), Expect = 2e-86
Identities = 137/201 (68%), Positives = 166/201 (82%)
Frame = -2
Query: 623 LRSLDYXERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV 444
LR+LD+ ERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFV
Sbjct: 28 LRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFV 87
Query: 443 YCGKXATLEVGNVMPVGAMPEGTIVCNLEEXMGDRXRXAXASGNFATVIGHNPDAKRTRV 264
YCGK A L VGNV+PVG MPEGTI+ N+EE GDR +SGN+ ++GH+ D +TRV
Sbjct: 88 YCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRV 147
Query: 263 KXPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 84
K PSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+
Sbjct: 148 KLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVD 207
Query: 83 HPLGAGNHQHIGKASTVQERN 21
HP G GNHQH+G ++TV ++
Sbjct: 208 HPHGGGNHQHVGHSTTVPRQS 228
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 313 bits (768), Expect = 2e-86
Identities = 137/201 (68%), Positives = 166/201 (82%)
Frame = -2
Query: 623 LRSLDYXERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV 444
LR+LD+ ERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFV
Sbjct: 28 LRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFV 87
Query: 443 YCGKXATLEVGNVMPVGAMPEGTIVCNLEEXMGDRXRXAXASGNFATVIGHNPDAKRTRV 264
YCGK A L VGNV+PVG MPEGTI+ N+EE GDR +SGN+ ++GH+ D +TRV
Sbjct: 88 YCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRV 147
Query: 263 KXPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 84
K PSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+
Sbjct: 148 KLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVD 207
Query: 83 HPLGAGNHQHIGKASTVQERN 21
HP G GNHQH+G ++TV ++
Sbjct: 208 HPHGGGNHQHVGHSTTVPRQS 228
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 53.6 bits (123), Expect = 2e-08
Identities = 36/125 (28%), Positives = 64/125 (51%)
Frame = -2
Query: 422 LEVGNVMPVGAMPEGTIVCNLEEXMGDRXRXAXASGNFATVIGHNPDAKRTRVKXPSGAK 243
L+ GN P+ +P GT++ + + + ++G+ A +I D K V+ SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 242 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPLGAGN 63
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HP G G
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 62 HQHIG 48
+ IG
Sbjct: 275 GKSIG 279
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 185 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 93
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 196 PATIPTMPLLLDGRTFLAPDGXXTLVRLASGLCPITVAKFPEAXAXRXLSPIXSSRL 366
PAT+P F P +L SGL V+ +P+ +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 360 KIAHNGTLRHSSNRHHISNFKSCXLSTINKLACVEPFGSNEELLPCL 500
K+ G +RH +SNF L I K+A V+P EL P L
Sbjct: 154 KLLETGKVRHIG----LSNFNDTNLERILKVAKVKPAVHQMELHPFL 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,765
Number of Sequences: 5004
Number of extensions: 54134
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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