Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P06
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   159   3e-40
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.50 
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    27   2.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.6  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.1  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  159 bits (386), Expect = 3e-40
 Identities = 73/122 (59%), Positives = 100/122 (81%)
 Frame = -2

Query: 428 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 249
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 248 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 69
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 68  RR 63
           R+
Sbjct: 120 RK 121


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 141 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 290
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 542 SSVKRRPVRI*YDSL*GI*MNCFSISVLSRVVLAKSDRMKFN 417
           SS+  + + I +DS+ GI +NCF +S+L  +    S  +  N
Sbjct: 196 SSIISKILSINHDSIWGIGVNCFHLSLLEPIAKMLSSLLPSN 237


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 507  VLNTYWPSFYTRAAFRAEVTLPYRP 581
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 259 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 173
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +1

Query: 7    FPRCIYPXSLPSAASLPFALRSRIALRSLFIFNLTITHFE--G*MPTYAVAPLAFSL*IL 180
            FP  +YP  L +  S P AL   +    L IF L   ++E  G +P +  A L   L + 
Sbjct: 2090 FPHEVYPLGLIAVFSWPLAL-VMLLFAILLIFGLPDYYWESPGNIPAFYTALLRRKLVLW 2148

Query: 181  SMYTTNFLRYTCITL 225
                T    Y   TL
Sbjct: 2149 FFVATILQNYWLSTL 2163


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = -1

Query: 483  ELLFYFGS*PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 334
            + L  + S  C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3290 QYLEQYSSFLCEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,552
Number of Sequences: 5004
Number of extensions: 48627
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)