Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P05
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          27   0.16 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -1

Query: 545 TAIFFINKCLKCGFQLSKLLKNPYSI*LQYQAIN 444
           T++F IN  ++CG+++ KLL+  Y + +   A++
Sbjct: 461 TSLFRINLGIECGYEIKKLLR--YKLLISQNAVS 492


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 417 VSI*ISMCSIYSLVL*LDTIWIFQQFAQLKTAFKTFV 527
           ++I  SM  I SLV     IWIF     L+T    F+
Sbjct: 60  LAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 417 VSI*ISMCSIYSLVL*LDTIWIFQQFAQLKTAFKTFV 527
           ++I  SM  I SLV     IWIF     L+T    F+
Sbjct: 60  LAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 367 FRSTRVTPYNKNKIRRLSLSK 429
           + +  VTPYNKN  +  S  K
Sbjct: 438 YPNASVTPYNKNYTKFCSTEK 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,031
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)