Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_P03
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 194 6e-51
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 194 6e-51
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 134 7e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 134 7e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 134 7e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 87 3e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 9e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 2e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 29 0.41
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.71
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 0.94
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.9
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 6.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 6.6
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 194 bits (474), Expect = 6e-51
Identities = 97/148 (65%), Positives = 111/148 (75%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 362 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 183
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 182 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 99
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 194 bits (474), Expect = 6e-51
Identities = 97/148 (65%), Positives = 111/148 (75%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 362 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 183
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 182 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 99
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 134 bits (325), Expect = 7e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
MQI VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 362 IQKESTLHLV 333
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 86.6 bits (205), Expect = 3e-18
Identities = 36/70 (51%), Positives = 53/70 (75%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 362 IQKESTLHLV 333
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -3
Query: 515 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 342
GK LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.5 bits (93), Expect = 9e-05
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 366
M + K L + + +DT I +K KIQ ++ +Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 365 NIQKE 351
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -3
Query: 542 MQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 363
+ + +K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 362 IQKESTLHLV 333
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 515 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 336
GK + ++ P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 11 GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 21 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 125
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.3 bits (60), Expect = 0.94
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 353 PSGYCSPRGYVHLPAAFQRRSTSVDWEGF 439
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 239 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 81
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = -2
Query: 408 RWKAAGRWTY----PL--GLQYPEGIHPPPGVEASWW 316
RWKAA R PL EG+H P G + WW
Sbjct: 99 RWKAARRIASREHEPLLQSRSLEEGLHAPIGKQQIWW 135
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 108 VTLPAVVTVLHHRHEHSGAALLAC 179
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = -3
Query: 581 FSLWYGDSVRRVKMQIXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 402
F L GD + V+ + + GKT TL VE I+ + + D + + + + G
Sbjct: 279 FYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAIDRQEQEESDLDDSKSSDAKSVTQG 338
Query: 401 KQLEDGRTLSDYNIQ 357
L YN +
Sbjct: 339 TTNLIVEKLRKYNFE 353
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 431 PNQQRLIFAGKQLEDGRTLSDYNI 360
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,170
Number of Sequences: 5004
Number of extensions: 43431
Number of successful extensions: 105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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