Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P02
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   169   2e-42
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   166   2e-41
04_03_0980 + 21406822-21409496,21410322-21410376                       29   2.4  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   4.2  
06_03_0543 + 21967787-21970261                                         29   4.2  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     27   9.7  
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963...    27   9.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  169 bits (410), Expect = 2e-42
 Identities = 74/122 (60%), Positives = 95/122 (77%)
 Frame = -2

Query: 639 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 460
           IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162

Query: 459 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 280
           I IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A 
Sbjct: 163 IGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAP 222

Query: 279 EQ 274
            Q
Sbjct: 223 AQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  166 bits (403), Expect = 2e-41
 Identities = 72/118 (61%), Positives = 92/118 (77%)
 Frame = -2

Query: 639 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 460
           IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162

Query: 459 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 286
           I IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 163 IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>04_03_0980 + 21406822-21409496,21410322-21410376
          Length = 909

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 378 EASTLHVPTTTTSNQ*NGKTWCCMGW----QCPQI 470
           +A +LHV   +T     G  WCC+ W    +CP+I
Sbjct: 659 KAESLHVHDLSTITPLPGGQWCCLKWCRIERCPKI 693


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 166 TRCSSCFWSTPCPRRMVCPGTR*VEHN 86
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 417 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 328
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 166 TRCSSCFWSTPCPRRMVCPGTR*VEHN 86
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>03_02_0865 -
           11895257-11895340,11896004-11896069,11896297-11896355,
           11896470-11896557,11897158-11897328,11897406-11897564,
           11897653-11897835,11897931-11898012,11898753-11898959,
           11899099-11899170,11901948-11902055,11902460-11902506
          Length = 441

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 327 RTNQPQHPSAGHGEAHHEA-STLHVPTTTTSNQ*N 428
           R NQP   +A   +  HEA   L VP+  + NQ N
Sbjct: 88  RANQPNSKNANEKQQEHEAQGALQVPSMNSLNQKN 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,378
Number of Sequences: 37544
Number of extensions: 363171
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)