Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_P02
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 159 2e-39
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 29 2.1
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 29 2.1
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 29 2.1
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 6.5
U23521-6|AAC46812.1| 469|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 159 bits (386), Expect = 2e-39
Identities = 71/126 (56%), Positives = 92/126 (73%), Gaps = 5/126 (3%)
Frame = -2
Query: 645 TXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 466
T I GRF+PG TNQIQ F+EPRLL++ DP DHQ +TEASYV +PVI+ NT+SPL+
Sbjct: 97 TAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKL 156
Query: 465 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFFYRDPEESE 301
+DI +PCN K SIGLMWW+LARE+L LRG + R + +++ DL+FYRDP E+E
Sbjct: 157 IDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDPTETE 216
Query: 300 KDEQQA 283
K+E A
Sbjct: 217 KEETGA 222
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 626 SHQVL-LLTRSKLHSVNLVX*LYWILHKTINPLLKLHMSTFL*LLCATQTPH 474
SH+V+ + + +LHS+NL LYW L + + + S F+ +LC H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 626 SHQVL-LLTRSKLHSVNLVX*LYWILHKTINPLLKLHMSTFL*LLCATQTPH 474
SH+V+ + + +LHS+NL LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 626 SHQVL-LLTRSKLHSVNLVX*LYWILHKTINPLLKLHMSTFL*LLCATQTPH 474
SH+V+ + + +LHS+NL LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 626 SHQVL-LLTRSKLHSVNLVX*LYWILHKTINPLLKLHMSTFL*LLCATQTPH 474
SH+V+ + + +LHS+NL LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 492 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 385
CNTD+ R + CNT + +G+ + L+AR ++
Sbjct: 49 CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 441 TKSSHSIGLMWWLLA 397
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>U23521-6|AAC46812.1| 469|Caenorhabditis elegans Hypothetical
protein F41C3.5 protein.
Length = 469
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 475 TKICGHCHPMQHQVFPFYWF 416
T++ GHC + +F F WF
Sbjct: 238 TQVTGHCATLVEDIFQFLWF 257
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 172 CCTRCSSCFWSTPCPRRMVCP 110
CCT CF ST C VCP
Sbjct: 53 CCTN-EECFMSTECSYSAVCP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,449,356
Number of Sequences: 27780
Number of extensions: 301227
Number of successful extensions: 905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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