Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P01
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    41   1e-04
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    35   0.010
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    31   0.12 
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 45/91 (49%)
 Frame = -3

Query: 459 VFLPNFWMKLVRPHPXQLPNIVHFHCSMEMTKYDIQNYLEKIYEVPVVDVRTKINMGXFK 280
           V+ PN    L R    Q P    F   + + K+D+++YL+ +Y + VV V+++I  G   
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 279 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 187
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 402 NIVHFHCSMEMTKYDIQNYLEKIYEVPVVDVRTKINMGXFKKDVVK 265
           N + FH  ++  K+ I+N ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 402 NIVHFHCSMEMTKYDIQNYLEKIYEVPVVDVRTKINMGXFKKDVVK 265
           N + FH  ++  K+ I+  + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 246 DDVKVAFVTLPKTMTFKYPDLFEXSINEXEGHAKSLDXSKK 124
           +D+   FV L     ++ PDL   S NE  GH K  + + K
Sbjct: 56  NDLSKGFVDLK---VYRVPDLSRPSFNEVVGHKKFDETASK 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,851
Number of Sequences: 5004
Number of extensions: 32834
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)