Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_P01
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         36   0.032
05_07_0307 - 29111643-29112104,29112222-29113214                       27   8.4  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
 Frame = -3

Query: 459 VFLPNFWMKLVRPHPXQLPNIVHFHCSM--EMTKYDIQNYLEKIYEVPVVDVRTKINMGX 286
           +   N  +KL+ P P  L ++  F        +K DI+  LE +Y   V +VRT +NM  
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNMEG 67

Query: 285 FKKDVVKG-YVIKEDDVKVAFVTLPKTMTFKYPDLFEXSINEXEGHAKS 142
             K + +G ++  + D K A+VTL   +    PDLF   +   E   K+
Sbjct: 68  --KKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKA 113


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
 Frame = -3

Query: 477 GNPQLRVFLPNFWMKLVRP--HPXQLPNIVHF-HCSMEMTKYDIQNYLEKIYEVPVVDVR 307
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 306 TKINMGXFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEXSINEXEGHAKS 142
             I         V   +++ DD+ VA + L + +  K  D  E      + + ++
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASETKAESKDANKQT 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,348
Number of Sequences: 37544
Number of extensions: 184151
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)