Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_O22
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   3.2  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    25   7.3  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.3  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   7.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.6  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    25   9.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   9.6  

>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 315 RMPLYLIDKKCNFHVPSNKPVSYNIIMTKGAWNTLKV 205
           ++ L L+D +  F+ PSN+ + +  I  K  + T +V
Sbjct: 374 QLSLILVDIEAKFYDPSNEDIQFRYIFLKMVFWTARV 410


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 240 IMTKGAWNTLKVYSLKASNCLRKLREMNHV 151
           ++  GAW      +  A + +R+LREM  V
Sbjct: 65  VLAGGAWTVTTAAATSARSTIRRLREMVEV 94


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 423 LLLRRTFIFITFQVGTFIQ**CVVFFFLKLSVLGIPRMPLYLIDKKCNF 277
           LL   +F+  TFQ  TF      +FFF  L++L + ++    ++KK ++
Sbjct: 124 LLYSSSFMATTFQTHTFTNSIETIFFF--LTILFLSKLNSVPLNKKISY 170


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 306 LYLIDKKCNFHVPSNKPVSYNIIMTKGAWNTLKVYSL-KAS 187
           +Y ID++C+   P   P+SY+  M   A+  +K + L KAS
Sbjct: 51  IYAIDQRCHGDSPCVAPLSYS-AMALDAFQFMKDHKLDKAS 90


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 KLHFLSIKYKGIRGIPNTLNFKKKNTTHYYCMNVPTW 388
           ++ FLS++YK +  I   LN  +K+    + +N   W
Sbjct: 416 RIVFLSLEYKFLTNIQPELNDAEKSQLDGFDLNKTNW 452


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 252 SYNIIMTKGAWNTLKVYSLKASNCLR 175
           ++N++++  A  TLK++ L   NC++
Sbjct: 266 AHNLLVSGSADTTLKLWDLSTCNCVK 291


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 418 VTENVYIYYIPSWNVH 371
           + +NVY  Y+ SW +H
Sbjct: 95  ILQNVYFKYLISWEIH 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,402
Number of Sequences: 5004
Number of extensions: 35241
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)