Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_O22
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419...    29   3.2  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   5.6  
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    27   9.8  

>02_03_0381 -
           18339290-18339994,18340083-18340103,18341925-18341982,
           18342084-18342220,18342480-18342650
          Length = 363

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 220 PSTFCHDYIIGDRFIRWY 273
           PSTFC+DYI   + I +Y
Sbjct: 76  PSTFCYDYIYNSKAIEFY 93


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 257 GLFDGT*KLHFLSIKYKGIRG-IPNTLNF 340
           G+F+GT +L FLS+ Y  + G IP  + F
Sbjct: 192 GMFNGTSQLVFLSLAYNKLTGSIPGAIGF 220


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 255 VSYNIIMTKGAWNTLKVYSLKASNCLRKLR 166
           +S N++ T G    LKVY  KA   + KLR
Sbjct: 142 ISNNVMQTDGQLEKLKVYECKAYLRMHKLR 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,521
Number of Sequences: 37544
Number of extensions: 185910
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)