Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_O22
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 282 NFHVPSNKPVSYNIIMTKGAWNTLKVYSLKASNCLRKLREMN 157
           ++ +P N     NI++       L V++L  +  LRK++EM+
Sbjct: 302 HWQLPHNSTNPPNILLYYRDSLALSVFALILTALLRKMQEMS 343


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 257 GLFDGT*KLHFLSIKYKGIRGIP 325
           GLF  T  L  + + Y G+R +P
Sbjct: 279 GLFASTRDLREIHLAYNGLRDLP 301


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 22  VQASCAILLFVSQCCYSCCK 81
           VQ  C I   + Q C   CK
Sbjct: 228 VQTGCTITRVIPQVCSGNCK 247


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 22  VQASCAILLFVSQCCYSCCK 81
           VQ  C I   + Q C   CK
Sbjct: 228 VQTGCTITRVIPQVCSGNCK 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,925
Number of Sequences: 438
Number of extensions: 2441
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)