Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_O15
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    29   0.61 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   3.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   5.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   10.0 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   10.0 
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   10.0 

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = -3

Query: 493 RESLRDKFKEIKI-----LTLASQYIFENLLYVRKNIVEFPRVCDLHNVNTRNKHRLALP 329
           RE + DKFK+IKI         S  I+  +L VR  I+E    CDL   +T +  R  L 
Sbjct: 169 RELIGDKFKDIKIGFFLHTPFPSSEIY-RVLPVRNEILEGVLNCDLVGFHTYDYARHFLS 227

Query: 328 A-ARIKKISNSXQG 290
           A +RI  +S    G
Sbjct: 228 ACSRILNLSTLPNG 241


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 276 LFNKIPQNVQLLPVHRFKKTVKERLCNKAY 187
           +FN +P +     +H  K T+  RLC K++
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSH 549


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 519 FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 418
           + ++++CT  GNP  +SL K KF    PN    ++
Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 523 AIRAIYNMHPRESLRDKFKEIKILTLASQYIFENLLYVRKNIVEF 389
           +I +  N  P   LR  +  +   TLAS  +  NL   RKN   +
Sbjct: 755 SIISALNSSPIHRLRKTWANLNSKTLASFELLNNLTEARKNFSNY 799


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 279 QLFNKIPQNVQLLPVHRFKKTVKERLCNKAYYKVK 175
           ++ +K     ++LP+H    T ++R C K Y K K
Sbjct: 832 EIKSKDGSKFEVLPLHASLNTSEQRRCFKTYTKRK 866


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +3

Query: 297 KELLIFLIRAAGNASLCLFLVFTLCKSQTLGNSTMFLRTYNKFSKMYWD 443
           + LL++   A  N  +C FL  +L K        +     ++   +Y+D
Sbjct: 173 RRLLVYTSEAGENIEICFFLTNSLFKRLLNNREALSKDEKSELQNLYYD 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,316
Number of Sequences: 5004
Number of extensions: 37289
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)