Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_N23
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 186 9e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 1e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 160 7e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 9e-32
02_04_0559 + 23869791-23869907,23869993-23872131,23872235-238723... 29 2.1
09_02_0366 + 7941550-7942161,7942230-7942775 28 4.9
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 4.9
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 8.6
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 27 8.6
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 186 bits (454), Expect = 9e-48
Identities = 92/133 (69%), Positives = 106/133 (79%)
Frame = -1
Query: 403 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 224
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 223 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 44
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 43 VTNAAARLRSQEN 5
VTN ARLRSQE+
Sbjct: 120 VTNKLARLRSQED 132
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 1e-42
Identities = 82/122 (67%), Positives = 97/122 (79%)
Frame = -1
Query: 403 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 224
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 223 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 44
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 43 VT 38
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 160 bits (389), Expect = 7e-40
Identities = 75/101 (74%), Positives = 86/101 (85%)
Frame = -1
Query: 307 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 128
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 127 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQEN 5
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQED 199
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1
Query: 403 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 311
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 133 bits (322), Expect = 9e-32
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = -1
Query: 415 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 236
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 235 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 128
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>02_04_0559 +
23869791-23869907,23869993-23872131,23872235-23872336,
23872720-23872773,23872804-23872899
Length = 835
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 323 IAIRLMPDKSLR---PLFDDCRPVNRS-YSHLVCFF*KRDSEPRGDTAAREGKRNNLVIG 490
I+++L D+ L D P N+S SH+ C+ D++ +TA+R R N+ IG
Sbjct: 153 ISLKLRQDRWLHIDDAKLDHNHPPNQSSVSHMNCYKKLTDAK-NEETASRSKGRRNVPIG 211
Query: 491 RPNSFKFPIVSRIKY 535
F + R+K+
Sbjct: 212 DKEQGSFTEIGRLKF 226
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 13 GSGGERPHSSL*C*AAGLFPRSASASSKRHHERSLRSTSCFASSRFPAL*HCELGPYGIH 192
G+GGE S+ L+P S+ +HH S+S +S+ A H G G H
Sbjct: 27 GAGGEEDDQSMLL--LSLWPPGHSSHHHQHHHHGAASSSACSSASISAAAHSG-GGGGGH 83
Query: 193 LGAYDGSSCW 222
A +S W
Sbjct: 84 GAAAAAASSW 93
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = -1
Query: 313 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 152
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 151 EILMMQNRKYCAEIAH 104
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 498 FGRPITRLFLFPSRAAVSPRGSLSRF 421
F R +F FPS +SPR SLSRF
Sbjct: 28 FPRLSVAVFYFPSLIPLSPRISLSRF 53
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 498 FGRPITRLFLFPSRAAVSPRGSLSRF 421
F R +F FPS +SPR SLSRF
Sbjct: 28 FPRLSVAVFYFPSLIPLSPRISLSRF 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,389
Number of Sequences: 37544
Number of extensions: 320943
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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