Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_N20
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 37 0.018
Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical pr... 31 0.88
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23450-7|AAK31470.3| 170|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 28 6.2
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 28 6.2
U29379-1|AAF99982.2| 319|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 36.7 bits (81), Expect = 0.018
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -2
Query: 422 AATPRCRTASTTWRPRPRVTPARTYSSFVQDGKRVT--PVTWRCTTRPGRISTRISLLYP 249
A T R T +T PR+T AR + + T P T R TT +T ++
Sbjct: 275 ATTKRITTTTTAAPTTPRLTTARATTPLATTSRPTTPSPTTPRATT--PLATTPLATTRA 332
Query: 248 PCPGRLQFKTSRQPSNLSPTIRRTTSRQR 162
P P +TS++P +PT R T+ +R
Sbjct: 333 PLPPSPPPRTSKRPVTQAPTTPRATTTRR 361
>Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical
protein F55G11.5 protein.
Length = 342
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 401 CDNEASLRRFTRSKREVSFSSAESCFIFNKGAAGRS 508
C+ +L + RSK+ SFSS S +FN A+G S
Sbjct: 194 CNYVGNLYQMYRSKKPYSFSSEGSIVVFNLAASGNS 229
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 31.1 bits (67), Expect = 0.88
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 17/195 (8%)
Frame = -1
Query: 618 TEDADALASRINKTLGSWPILQLTDTNDDRELASFAMLLPAAPLLNIKQLSADEND--TS 445
T+ D + + N+ + +Q D N AS + AP + ++ EN T
Sbjct: 952 TDSDDEDSEKSNRDMSYRTAIQSFDQNSQSASASSSKSTTTAPSNSEMRIEITENPLHTY 1011
Query: 444 LLDL-VNLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYN-------- 292
+ L + +S AS S H +++ + A+ +L + G V N
Sbjct: 1012 ITPLRIEKKSSASSSSSSHQPSSSIEKQAARRLLQPISTTHNIRYGVATVENSSQDPTRP 1071
Query: 291 PSRQD------LHANLTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVV 130
PS D LH L A + + T +SP + V + + + L+P + +
Sbjct: 1072 PSTDDSLGDPALHEPLWANLNPHSSYTSAMMSPIMNEVMSNDETTDDEKGRLIPDRPPIP 1131
Query: 129 VSYVPIKHEKREKDE 85
S +K KREKD+
Sbjct: 1132 HSPRELKRLKREKDQ 1146
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 293 TRPGR-ISTRISLLYPPCPGRLQFKTSRQPSNLSPTIRRTTSR 168
T+P + I +R+SLL PP P Q K +++ ++ T RRT ++
Sbjct: 320 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 361
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 293 TRPGR-ISTRISLLYPPCPGRLQFKTSRQPSNLSPTIRRTTSR 168
T+P + I +R+SLL PP P Q K +++ ++ T RRT ++
Sbjct: 388 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 429
>U23450-7|AAK31470.3| 170|Caenorhabditis elegans Hypothetical
protein C30B5.6 protein.
Length = 170
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 264 LTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYVPI 112
LT +PS + T + + +V+ K D+ VP K+ + VS PI
Sbjct: 89 LTTLPSTTQSTTTRTTTQPSTIVSTRQKYVNVDGDIYVPGKTVISVSSTPI 139
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 428 TSAATPRCRTASTTWRPRPRVTPARTYSSFVQDGKRVTPVTWRCTT 291
T TP TA+TT P+P T T SS P T TT
Sbjct: 505 TVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTT 550
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 428 TSAATPRCRTASTTWRPRPRVTPARTYSSFVQDGKRVTPVTWRCTT 291
T TP TA+TT P+P T T SS P T TT
Sbjct: 346 TVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTT 391
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 428 TSAATPRCRTASTTWRPRPRVTPARTYSSFVQDGKRVTPVTWRCTT 291
T TP TA+TT P+P T T SS P T TT
Sbjct: 386 TVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTT 431
>U29379-1|AAF99982.2| 319|Caenorhabditis elegans Hypothetical
protein K05B2.2a protein.
Length = 319
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 295 VHRHVTGVTLFPSCTNDEYVLAGVTRGRGRHVVL 396
+ R V+GVT +C+ Y LA T RGR V++
Sbjct: 10 LERSVSGVTDTTTCSQIIYALAHATSQRGRFVMV 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,414
Number of Sequences: 27780
Number of extensions: 317308
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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