Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N20
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.25 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 721 DGVHXEGRWLPAGP 680
           D +H E R+LPAGP
Sbjct: 4   DSIHWEARYLPAGP 17


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 159 VLVPAKSTVVVSYVPIKHEKREKD 88
           +L+   ST VVS    KH +R +D
Sbjct: 13  LLLSIASTYVVSVAGYKHSRRHRD 36


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 648 RPPSAAPVPVTEDADALASRINKTLGSWPILQLTDTN 538
           R P+A+P P  + A           GS  +LQ   +N
Sbjct: 739 RSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSN 775


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 656 DTLWFXSIRSGREPSSFXVNTVGSDSLVTI 745
           D +W  ++    EPSS        D LV+I
Sbjct: 95  DLIWTPTVYVSNEPSSAITGNNVKDVLVSI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,281
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)