Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N17
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    78   1e-15
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   3.2  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   5.6  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    25   7.4  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   7.4  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    25   9.8  

>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 28/228 (12%)
 Frame = -2

Query: 666 SGVIINTCGWIKNAG-YKVLTHAAQA-FEVDVILVLDNERLYNELKRDM--PKFVKVVYL 499
           SG +++T    +NA  Y+ + H+    F +++I+VL +ERLY+ +KR      ++ VV +
Sbjct: 229 SGCLVDTSSIQENAEKYQDILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKV 288

Query: 498 PKSGGVVERSGTQRAEARDARIREYXYG-KRTPYYPHSFDVKFSDLKIYKV--GAPSLP- 331
             SGG ++R      + +   I++Y YG  R P  P S  V  + L +Y+V   + S P 
Sbjct: 289 SSSGGCIDREEEWIQQFQARCIKQYFYGDDRMPLSPLSMIVDSTQLVVYRVLEASESGPK 348

Query: 330 DSCMPLGMRAE-------DALTRL-----------VAVWGGRALQHRLLAVSFAAEPDDH 205
            S +PLG   E       D  T L           ++      LQ+ +LAVS   E +D 
Sbjct: 349 SSVLPLGFEEENTQSEKQDGNTSLRLHGKGEFLERISTEAMTILQNSILAVSSVGEDEDE 408

Query: 204 --VLHSNLAGFVCVTAVDMERQTLTVLSPQPRPLPNTILLLSELQYMD 67
             V+ S + G+V V+ VD  +  +T+LSP P  LP+  L++   ++ +
Sbjct: 409 ATVVDSCIIGYVFVSDVDDVKNRMTLLSPVPEQLPSNALIMGTCKWQE 456


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 473 RSTTPPLLGR*TTFTNLGMSRFSSLYNLSLSKTNMTSTSKACAA*VKTL*PAFLIXPHV 649
           R +  P+  R  + T+ G+ RF   Y+ SLSK+   S++ A     KT  P+F++ P +
Sbjct: 638 RKSQSPICAR--SATSAGLPRFE--YHTSLSKSLEHSSTPASLQATKTPSPSFVLEPGI 692


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 69  PCIVVLITTGSCWGEGAAAGTGPSKSVAPC 158
           P I  +   G+C G+G   GTG S S   C
Sbjct: 59  PLIQQVCKNGTCAGDGFCNGTGGSASCTGC 88


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 169 NGSRHGATDFDGPVPAAAPSPQHDPVVIRTTIH 71
           NGS     DF   +  ++PS  H P +  T+ H
Sbjct: 519 NGSYEDIADFSDDLEMSSPSKWHGPPIRTTSSH 551


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 152 SMSTAVTQTNPARLECSTW 208
           S S +VTQT PAR+    W
Sbjct: 110 SASGSVTQTQPARISTQVW 128


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -2

Query: 543 ELKRDMPKFVKVVYLPKSGGVVERSGTQRAEARDARIREYXYGKRTPYYPHSFDVKFSDL 364
           EL R + K +KVVYL + GG++    T++  +     REY    + P+  +   +K  ++
Sbjct: 250 ELARVL-KPLKVVYLNEKGGLI-NGETKKKISSIYLDREYDGLMKQPWVKYGTKLKIKEI 307

Query: 363 K 361
           K
Sbjct: 308 K 308


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 174 CVTAVDMERQTLTVLSPQPRPLPNTILLLSELQYMD 67
           C   + ++R+T   L    +PLP  + LLS+L+ ++
Sbjct: 67  CEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLN 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,458
Number of Sequences: 5004
Number of extensions: 40762
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)