Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N17
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0074 + 6567362-6567550,6567685-6567753,6567869-6567970,656...   127   9e-30
02_05_0432 + 28936293-28936796,28937382-28939250                       33   0.27 
11_01_0798 + 7026509-7029272,7031573-7031994                           29   2.5  
01_01_0104 + 780442-781273,782514-783424                               29   2.5  
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388...    29   4.4  
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572...    28   7.7  
02_02_0445 - 10351483-10351606,10351987-10353170                       28   7.7  

>02_02_0074 +
           6567362-6567550,6567685-6567753,6567869-6567970,
           6568386-6568627,6569057-6569195,6569298-6569333,
           6569838-6569972,6570315-6570547,6571204-6571298,
           6571331-6571374,6571808-6571888
          Length = 454

 Score =  127 bits (306), Expect = 9e-30
 Identities = 79/194 (40%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
 Frame = -2

Query: 666 SGVIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELK---RDMPKFVKVVYLP 496
           +G+IINT GW++N G ++L ++ + F+        NE+L+  LK   ++ P  + VV L 
Sbjct: 231 AGMIINTMGWVENLGLELLHNSIEIFKA-------NEKLWKMLKDAAKNKPN-IDVVKLH 282

Query: 495 KSGGVVERSGTQRAEARDARIREYXYGKRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMP 316
           KS GVV R+   R + R  RI+EY YG      PHS  V FSD+ +YK+G    P S +P
Sbjct: 283 KSEGVVPRNPKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVYKIGTHQAPKSALP 342

Query: 315 LGMRAEDALTRLVAVWGGRALQHRLLAVSFAAEPDDHVLHSNLAGFVCVTAVDMERQTLT 136
           +G       TRLVAV     + H +LAVS+A EPD+ ++ SN+AGF+ VT VD++R    
Sbjct: 343 IGAEPVADPTRLVAVNISTDMVHTVLAVSYAKEPDE-IVSSNVAGFIHVTDVDIQR---- 397

Query: 135 VLSPQPRPLPNTIL 94
               QPR L  T L
Sbjct: 398 -YPQQPRKLACTFL 410


>02_05_0432 + 28936293-28936796,28937382-28939250
          Length = 790

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -2

Query: 621 YKVLTHAAQAFEVDVILVLDNERLYNELKRDMPKFVKVVYL 499
           +K++    +A EVD++  L NE + +++K  MP F+ ++Y+
Sbjct: 409 HKIIEIMTKALEVDIVEQLMNEFIESDMKHLMPAFLDLMYM 449


>11_01_0798 + 7026509-7029272,7031573-7031994
          Length = 1061

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = -2

Query: 420  YGKRTPYYPHSFDV-KFSDLKIYKVGAPSLPDSCMPLGMRAE--DALTRLVAVWGGRALQ 250
            YG   P Y ++  V + SD+  Y V    L     P+G   E  D +     V  GR   
Sbjct: 916  YGYIAPEYAYTLRVDEKSDVYSYGVVLLELITGRRPVGDFGEGVDIVQWTKRVTDGRRES 975

Query: 249  -HRLLAVSFAAEPDDHVLHSNLAGFVCVTAVDMERQTL 139
             HR++    +  P D V H      +CV    +ER T+
Sbjct: 976  VHRIIDRRISTVPMDEVAHIFFVSMLCVQENSVERPTM 1013


>01_01_0104 + 780442-781273,782514-783424
          Length = 580

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -2

Query: 246 RLLAVSFAAEPDDHVLHSNLAGFVCVTAVDMERQTLTVLSPQPRPLPNTILLLSELQYMD 67
           R      A    D +LH  + G   VT++D +   + ++   P P P   L++  L   D
Sbjct: 67  RASCARLACSGQDTILHHPILGPCKVTSIDYKEAVINIIHLLPFPCPLQKLMVDSLPPDD 126

Query: 66  NH 61
            H
Sbjct: 127 YH 128


>02_05_0440 -
           29035974-29036356,29037977-29038133,29038260-29038824,
           29038866-29039191
          Length = 476

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +2

Query: 92  NRIVLGRGRGCGDRTVKVCRSMSTAVTQTNPARLECSTWSSGSAAKDTASRRCCSARPP 268
           +R   G    C       CRS+STA +     R   ++ SS SAA  TA  R     PP
Sbjct: 59  SRCPTGPSTACQTPPSGGCRSISTATSSCRTPRAPAASGSSSSAA--TARTRWMPTDPP 115


>05_04_0139 +
           18355597-18355696,18356665-18356778,18357118-18357263,
           18357365-18357910,18358397-18358600
          Length = 369

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 181 VRLCNGSRHGATDFDGPVPAAAPSPQHDPVVIR-TTIHGQSLALI 50
           VRL +  R+G    DG +  A  +  HD VV R   +HG  +  I
Sbjct: 202 VRLVSSYRYGGGGVDGELAIAEAAELHDAVVGRGQALHGDDVVRI 246


>02_02_0445 - 10351483-10351606,10351987-10353170
          Length = 435

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 91  QQDRVGERARLRGQDRQSLSLHVDCRYTDEPREVGVQHVVV-GLRREGHGEQAVLQRA 261
           Q+D + ER RL  ++RQ   L V  R   E R++  + +VV  +R+E H E+ + + A
Sbjct: 188 QRDTIAERERLEEEERQLEEL-VKKRL--EARKIETRQIVVEEIRKEEHIEKTLNEEA 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,092
Number of Sequences: 37544
Number of extensions: 322401
Number of successful extensions: 1419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)