Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_N17
(667 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U73524-1|AAC50780.1| 425|Homo sapiens putative ATP/GTP-binding ... 268 1e-71
BC000446-1|AAH00446.1| 425|Homo sapiens CLP1, cleavage and poly... 268 1e-71
AF170708-1|AAD50989.2| 722|Homo sapiens T-box protein TBX3 prot... 33 1.2
X79981-1|CAA56306.1| 784|Homo sapiens VE-cadherin protein. 31 2.8
X59796-1|CAA42468.1| 780|Homo sapiens cadherin-5 protein. 31 2.8
U84722-1|AAB41796.1| 784|Homo sapiens vascular endothelial cadh... 31 2.8
BC117520-1|AAI17521.1| 669|Homo sapiens CDH5 protein protein. 31 2.8
BC096365-1|AAH96365.1| 662|Homo sapiens CDH5 protein protein. 31 2.8
BC096364-1|AAH96364.3| 669|Homo sapiens CDH5 protein protein. 31 2.8
BC096363-1|AAH96363.1| 669|Homo sapiens CDH5 protein protein. 31 2.8
AB209908-1|BAD93145.1| 807|Homo sapiens cadherin 5, type 2 prep... 31 2.8
AB035304-1|BAA87418.1| 784|Homo sapiens cadherin-5 protein. 31 2.8
>U73524-1|AAC50780.1| 425|Homo sapiens putative ATP/GTP-binding
protein protein.
Length = 425
Score = 268 bits (657), Expect = 1e-71
Identities = 122/200 (61%), Positives = 155/200 (77%)
Frame = -2
Query: 666 SGVIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSG 487
SG +INTCGW+K +GY+ L HAA AFEVDV++VLD ERLYNELKRD+P FV+ V LPKSG
Sbjct: 224 SGCVINTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSG 283
Query: 486 GVVERSGTQRAEARDARIREYXYGKRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGM 307
GVVERS R E RD RIREY YG R +YPH+F+VKFSD+KIYKVGAP++PDSC+PLGM
Sbjct: 284 GVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGM 343
Query: 306 RAEDALTRLVAVWGGRALQHRLLAVSFAAEPDDHVLHSNLAGFVCVTAVDMERQTLTVLS 127
ED +LV V GR + H LL+VS A ++++ +++AGF+ VT+VD+E Q TVLS
Sbjct: 344 SQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLS 403
Query: 126 PQPRPLPNTILLLSELQYMD 67
P PRPLP LL+ ++++MD
Sbjct: 404 PAPRPLPKNFLLIMDIRFMD 423
>BC000446-1|AAH00446.1| 425|Homo sapiens CLP1, cleavage and
polyadenylation factor I subunit, homolog (S.
cerevisiae) protein.
Length = 425
Score = 268 bits (657), Expect = 1e-71
Identities = 122/200 (61%), Positives = 155/200 (77%)
Frame = -2
Query: 666 SGVIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSG 487
SG +INTCGW+K +GY+ L HAA AFEVDV++VLD ERLYNELKRD+P FV+ V LPKSG
Sbjct: 224 SGCVINTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSG 283
Query: 486 GVVERSGTQRAEARDARIREYXYGKRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGM 307
GVVERS R E RD RIREY YG R +YPH+F+VKFSD+KIYKVGAP++PDSC+PLGM
Sbjct: 284 GVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGM 343
Query: 306 RAEDALTRLVAVWGGRALQHRLLAVSFAAEPDDHVLHSNLAGFVCVTAVDMERQTLTVLS 127
ED +LV V GR + H LL+VS A ++++ +++AGF+ VT+VD+E Q TVLS
Sbjct: 344 SQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLS 403
Query: 126 PQPRPLPNTILLLSELQYMD 67
P PRPLP LL+ ++++MD
Sbjct: 404 PAPRPLPKNFLLIMDIRFMD 423
>AF170708-1|AAD50989.2| 722|Homo sapiens T-box protein TBX3
protein.
Length = 722
Score = 32.7 bits (71), Expect = 1.2
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 329 SGSDGAPTLYILRSENLTSK--ECG*YGVLFPXKYSRMRASRASALCVPERSTTPPLLGR 502
SG+ A + L+ L S+ +G LFP Y+ M A+ A++L P+ T PLL
Sbjct: 551 SGASAATLPFHLQQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASLRQPQLRCTAPLLNL 610
Query: 503 *TTFTNLGMSRFS 541
T L S +S
Sbjct: 611 NTMRPRLRYSPYS 623
>X79981-1|CAA56306.1| 784|Homo sapiens VE-cadherin protein.
Length = 784
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>X59796-1|CAA42468.1| 780|Homo sapiens cadherin-5 protein.
Length = 780
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 1 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 45
>U84722-1|AAB41796.1| 784|Homo sapiens vascular endothelial
cadherin protein.
Length = 784
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>BC117520-1|AAI17521.1| 669|Homo sapiens CDH5 protein protein.
Length = 669
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>BC096365-1|AAH96365.1| 662|Homo sapiens CDH5 protein protein.
Length = 662
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>BC096364-1|AAH96364.3| 669|Homo sapiens CDH5 protein protein.
Length = 669
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>BC096363-1|AAH96363.1| 669|Homo sapiens CDH5 protein protein.
Length = 669
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
>AB209908-1|BAD93145.1| 807|Homo sapiens cadherin 5, type 2
preproprotein variant protein.
Length = 807
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 28 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 72
>AB035304-1|BAA87418.1| 784|Homo sapiens cadherin-5 protein.
Length = 784
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 75 IVVLITTGSCWG-----EGAAAGTGPSKSVAPCRLPLHRRTPRGW 194
+++L T+G+C G AAAG P++ LP HRR R W
Sbjct: 5 MMLLATSGACLGLLAVAAVAAAGANPAQRDTHSLLPTHRRQKRDW 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,483,541
Number of Sequences: 237096
Number of extensions: 1667465
Number of successful extensions: 5806
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5799
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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