Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N17
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.21 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 537 KRDMPKFVKVVYLPKSGGVVERS 469
           KR +P F+K  Y P+S G VE S
Sbjct: 265 KRTLPHFIKDDYGPESRGFVENS 287


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 177 VCVTAVDMERQTLTVLSPQPRPLPNTILLLSELQYMD 67
           VC+        ++TV    PR L N++ ++ E +Y+D
Sbjct: 9   VCLGIACQGITSVTVRENSPRKLANSMNVIHEWKYLD 45


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 660 VIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKR-DMPKFVK 511
           V  N+ G + +   +V    AQA++VDV ++    R    + R  +P FVK
Sbjct: 109 VASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVK 159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 660 VIINTCGWIKNAGYKVLTHAAQAFEVDVILVLDNERLYNELKR-DMPKFVK 511
           V  N+ G + +   +V    AQA++VDV ++    R    + R  +P FVK
Sbjct: 109 VASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVK 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,387
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)