Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N13
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    32   0.062
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    30   0.33 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.44 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.58 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.1  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   3.1  
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    26   5.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   7.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
 Frame = -3

Query: 518 PALET*PGIPSLFADPLRPVIYASPTRVEP--TPSAPQVTTAP----VLSVRSALVLPGT 357
           P     P +PS+   P+ PV+  +P+  +P   P AP+V + P    V  V  A  +P  
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637

Query: 356 SETPLFPANVGSVNWILSAPIT--WPALVTSAWIPVSVTLNAVPAPFVWPGDILPSA 192
              P+ P  V SV    + P+    P++      PV   + +VP P   P  ++P A
Sbjct: 638 PAAPVVP-EVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP--VVPEA 691



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = -3

Query: 500 PGIPSLFADPLRPVIYASPTRVEP---TPSAPQVTTAPVLSVRSALVLPGTSETPLFPAN 330
           P +P +F  P R +  AS    +P   TPS PQ   APV+    ++  P  +  P+ P  
Sbjct: 486 PAMPKVF--PERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAA--PVAP-E 540

Query: 329 VGSVNWILSAPIT--WPALVTSAWIPVSVTLNAVPAPFVWP 213
           V S     +AP+    P++     +PV     +VP P V P
Sbjct: 541 VPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAP 581



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = -3

Query: 524 SVPALET*PGIPSLFADPLRPVIYASPTRVEPTPSAPQVTTAP-VLSVRSALVLPGTSET 348
           S P     P +P   + P RP +   P  +   P  P    AP V SV    V P   E 
Sbjct: 543 SAPQRPAAPVVPEAPSVPQRPAVPVVPEALS-VPQPPVAPVAPEVPSVPQPPVAPVVPEA 601

Query: 347 PLFP 336
           P  P
Sbjct: 602 PSVP 605


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -3

Query: 530 PQSVPALET*PGIPSLFADPLRPVIYASPTRVEP----TPSAPQ-VTTAPVLSVRSALVL 366
           P  +P      GIPS+   P+  VI  SPT   P     P  P  +  AP+L VR  L  
Sbjct: 119 PHPLPPKRVSLGIPSISNPPVDTVISDSPTSPHPPSFVQPHPPYGIFAAPILDVR-VLTN 177

Query: 365 PG 360
           PG
Sbjct: 178 PG 179


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
 Frame = -3

Query: 647 SAHQTASVPXTSPPVCTTLASIPXXXXXXXXXXXXXXX*PQSVPALET*PGIPSL--FAD 474
           + + T  V  T PP  T+  S P                P +  +  T   IP       
Sbjct: 294 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTT 353

Query: 473 PLRPVIYASPTRVEPTPSAPQVTTA------PVLSVRSALV----LP--GTSETPLFPAN 330
           P+ P +  + T    TP  P  T++      P+LS  ++      +P  G S TP+ P  
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTV 413

Query: 329 VGSVNWILSAPITWPALVTSAWIPVSVT 246
             + +   S P+T     TS  +P + T
Sbjct: 414 PPTSS---STPLTTTNCTTSTSVPYTST 438


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 530 PQSVPALET*PGIPSLFADPLRPVIYASPTRVEPTPSAPQVTTAPVLSVRSALVLPGTSE 351
           P ++ A++  PG+ ++ +  L    +A    V    S   +TTA +LS R  +V+P  + 
Sbjct: 370 PFAINAVKPAPGLSNISSASLPKPSFAKQAAVGSQSSTTSMTTARLLSDRFPVVMP-VAN 428

Query: 350 TPLFPANV 327
           T   P  V
Sbjct: 429 TAAIPEKV 436


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -3

Query: 443 TRVEPTPSAPQVTTAPVLSVRSALVLPGTSETPLFPANVGSVNWILSAPIT 291
           T    T S    +TAP  +  S L     S TPL  AN  +     S P+T
Sbjct: 506 TSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLT 556



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 443 TRVEPTPSAPQVTTAPVLSVRSALVLPGTSETPLFPANVGSVNWILSAPIT 291
           T    T S    +TAP  +  S L     S TPL  AN  +     S P++
Sbjct: 392 TSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLS 442


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -3

Query: 530 PQSVPALET*PGIPSLFADPLRPVIYASPTRVEPTPSAPQVTTAPVLSVRSALVLPGTSE 351
           P S+P+      +PSL A    P+   S   V   P++P    APV S+  A  +  TS+
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV-SMNPA--INSTSK 289

Query: 350 TPLFP 336
            PL P
Sbjct: 290 PPLPP 294



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 530 PQSVPALET*P-GIPSLFADPLRPVIYASPTRVEPTPSAPQVTTA 399
           P S P     P G+P+  A PL P   A P    P P+AP  + A
Sbjct: 450 PPSAPIAPPLPAGMPA--APPLPPAAPAPPPAPAPAPAAPVASIA 492


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 473  PLRPVIYASPTRVEPTPSAPQVTTAPVLSVRSALVLPGTSETPLFPAN 330
            P+RP   A P    PTP  P ++  P  S       P ++  P  PA+
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 261 DPRTGNQRRPGDRSTENPVHTPHVRRKQGRFRCTR 365
           DP  G   R    ST N  H+ HV RK+G  +C++
Sbjct: 71  DPSKGYYSRLWTGSTNNLSHSVHVLRKEGH-KCSK 104


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 479  ADPLRPVIYASPTRVEPTPSA 417
            ADP +  +Y  PT  +P PSA
Sbjct: 1034 ADPFQSPLYVQPTGFQPPPSA 1054


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 294 DRSTENPVHTPHVRRKQGRFR 356
           + S E P+HT  V +KQGR R
Sbjct: 262 NESVELPLHTHFVAKKQGRIR 282


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 152 QFTRASPLCPEGQVQTARCLLAIQTAPEPH*VLP 253
           Q  +A  +CPE             T P+PH VLP
Sbjct: 99  QLRQAVDVCPESMSTEGMLWFTDLTLPDPHGVLP 132


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 291 GDRSTENPVHTPHVRRKQGRF 353
           GDR+T  P H  + R+K G F
Sbjct: 324 GDRTTGQPRHANNGRKKHGNF 344


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 202 KMSPGHTNGAGTALSVTET 258
           KMSP H  G+ TAL V ET
Sbjct: 339 KMSPKHGGGSLTALPVIET 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,312
Number of Sequences: 5004
Number of extensions: 55849
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)