Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N11
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.0  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.0  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   3.4  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.9  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -2

Query: 491 YIRYNKLHLSDICTFNAFRLYCAKLMHVFKHIFLPRIIYQYSTNF 357
           Y+    L LSD C+F+            + H+++ R +  Y   F
Sbjct: 659 YVDIMDLQLSDFCSFSVLETLKKLENQYYSHVYINRAVSSYDKAF 703


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 203 VQVMMHNCFYIFHFIIAAESYRN 271
           + + + NC Y FHF IA+E + N
Sbjct: 68  LDICVKNCGYPFHFQIASEEFLN 90


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 72  SRHRQKEKER-RPTXEHGGPQR 10
           +RHR+KEKER R    HG  +R
Sbjct: 133 NRHRRKEKERTRSNHRHGSHRR 154


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 491 KLFEDLITYLENISKFMGLFXK*K 562
           KLFE +I Y+   +K +G+F K K
Sbjct: 117 KLFEKIIEYIRATNKKVGVFPKDK 140


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 330 LCGLKKENNKIGRILINNTWK-EDMFKNMHQLCAIQAKSIKSTYI 461
           L G+K EN+K+G  L   +W+ E+  K     C+      K  YI
Sbjct: 196 LTGVKPENSKVGWRLTKISWRIEEQIKAQINGCSTHT-GTKKPYI 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,294
Number of Sequences: 5004
Number of extensions: 37268
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)