Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N11
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical p...    29   2.3  
U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical p...    29   2.3  

>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 169 FNYYEEHFVILCASYDAQLFLYFPFHNSCRKLS*PFKFMNYNL 297
           F YY   F+++C S +  + +YFPF    +K   PF F N+ +
Sbjct: 88  FTYYFGPFILICMSINRFIAIYFPFSTISKK---PF-FTNFGI 126


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 336 GLKKENNKIGRILINNTWKEDMFKNMHQLCAIQAKSI 446
           GL K N K   +LI N W  +  +  +  C +QAK I
Sbjct: 436 GLDKRNGKFKFLLIGNCWAANHARIFYDECKVQAKRI 472


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 336 GLKKENNKIGRILINNTWKEDMFKNMHQLCAIQAKSI 446
           GL K N K   +LI N W  +  +  +  C +QAK I
Sbjct: 436 GLDKRNGKFKFLLIGNCWAANHARIFYDECKVQAKRI 472


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 303 KEKKQ*CTFLCGLKKENNKIGRILINNTWKEDMFKNMHQLCAIQAKSI 446
           KE  + C    GL K       + I N+W  +  K ++Q C  +AKSI
Sbjct: 428 KELLEWCRHTQGLSKTGGGYKMVFIGNSWVPNHAKLINQECEGKAKSI 475


>Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical
           protein F56H6.11 protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 321 CTFLCGLKKENNKIGRILINNTWKEDMFKNMHQLCAIQAKSI 446
           C +   L K+  K+  ILI N+W  +  K  HQ C  ++KSI
Sbjct: 431 CKYSQDLPKDGYKM--ILIGNSWVPNHQKLFHQECGNKSKSI 470


>U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical
           protein K02F3.12b protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 274 MVTIAFGSYYEMENIKTIVHHNLHIKLQNALHNS 173
           + T+AFG   +  N++ ++HH+L   ++N    S
Sbjct: 364 VATVAFGMGIDKPNVRFVIHHSLPKSIENYYQES 397


>U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical
           protein K02F3.12a protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 274 MVTIAFGSYYEMENIKTIVHHNLHIKLQNALHNS 173
           + T+AFG   +  N++ ++HH+L   ++N    S
Sbjct: 387 VATVAFGMGIDKPNVRFVIHHSLPKSIENYYQES 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,634
Number of Sequences: 27780
Number of extensions: 216715
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)