Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_N10
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 28 2.0
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 28 2.0
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 27 3.4
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 27 3.4
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401... 27 4.5
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 27 6.0
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 27 6.0
07_03_0072 - 13051145-13052362 26 7.9
01_06_1620 + 38697960-38698131,38698532-38700732 26 7.9
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913... 26 7.9
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 275 AVTYSSVPISIDLWS-TITTLSTTPNYSAKGLRTFI 171
+ T S+ P WS ++TT+ +TPNY K F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 152 HPPLASPFRAFWPMIRLTAPLPLTSL 75
HP + + R+FWP LTA L L L
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHL 345
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 181 EPSLRSTPGAIHHWQVHSGHS 119
EP++R PG W HSG S
Sbjct: 138 EPTIRGIPGQEARWMTHSGSS 158
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 225 HNAKYDAKLFRKRVENLHYVL 163
HNAK+ +++RK E HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301
>01_06_1733 +
39537618-39537722,39537865-39538028,39539796-39540102,
39540914-39541221,39541421-39541580
Length = 347
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 197 SAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTAPL 90
+ +GL+ I + RCH + W ++RL A L
Sbjct: 246 ACRGLQLLIRHFSRCHRTSCPRCQRMWQLLRLHAAL 281
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 343 QSHFDNETANHYISPRRCGDR 281
Q+H + TAN YIS R G R
Sbjct: 259 QTHSETRTANFYISDRNTGKR 279
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -1
Query: 258 GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 100
GT+ N+ ++ D KR+ ++HY+ +PS + + DK H
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNH 294
>07_03_0072 - 13051145-13052362
Length = 405
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 87 RKRCCESYHRPECPEWTCQ--WWMAPGVERNEGSQPFCGIIWRRT 215
R R C + RP C W C+ +W + +R P + WRR+
Sbjct: 204 RWRACLAGTRPRCSAWQCRRGYWRSQRRQRRRLRVP---LPWRRS 245
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 307 YNDLQFHCRNDSERLSI 357
YN+LQF RN SERL +
Sbjct: 488 YNELQFLTRNFSERLGV 504
>01_05_0720 -
24588623-24588658,24588888-24589196,24589449-24591366,
24591412-24591693,24592027-24592328
Length = 948
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 CCESYHRPECPEWTCQWWMAPG---VERNEGSQPFCGII 203
CC + +P CP W AP ++ +E + P G++
Sbjct: 569 CCCCFPKPSCPRRIKNLWSAPDEEPLDDDEDALPIMGML 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,665
Number of Sequences: 37544
Number of extensions: 183900
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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