Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N08
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 651 LASAIVVITTSGKSAHLLSKYR 586
           L   ++++T +  S H+LSKY+
Sbjct: 12  LFGVLLLLTNADNSVHILSKYQ 33


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 4   LHILFIQTCPPLTH 45
           +H+ F++T PP +H
Sbjct: 140 IHVSFLRTVPPYSH 153


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 489 TASDWLKDVDNRVQSGLRFGRQRG 418
           + ++W+    +  +   RFGRQRG
Sbjct: 344 SVTNWVSGNHDNHRVASRFGRQRG 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,045
Number of Sequences: 438
Number of extensions: 2491
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)