Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N05
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191...    29   2.6  
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141...    28   4.5  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    28   4.5  

>07_03_1267 +
           25318220-25318407,25318674-25318844,25319086-25319188,
           25319394-25319885,25320723-25321156,25321333-25321388,
           25321711-25321775,25322139-25322147
          Length = 505

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 177 SCS*ELRRRLATGIPQRCP 121
           +C+ E+RRRLA+G   RCP
Sbjct: 27  TCTPEMRRRLASGPQDRCP 45


>07_03_1182 -
           24610862-24611637,24612223-24612340,24612441-24614120,
           24614253-24614320,24615370-24615550
          Length = 940

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 338 ISKIFSKIRCDQPILATHKRPAGCSLSKSTYLSHSKGNKSI 216
           + K FSK   +   L+     A CS S  +  S   GNKSI
Sbjct: 83  LEKTFSKSMTENSSLSIESSRASCSSSSCSSFSSLDGNKSI 123


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 257 KSTYLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDWLPVF 135
           KS  +SHS   K+  ++   GN+   NH   + V  ++P+F
Sbjct: 452 KSVLISHSSVQKARAVLEEEGNMKKENHKQLSNVDKYIPIF 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,638
Number of Sequences: 37544
Number of extensions: 219106
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)