Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N05
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 248 YLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDWLPVFHKDVLFW 114
           Y+    GN S L+++      + +H+++ F    L V      FW
Sbjct: 178 YMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLVVMLSWFSFW 222


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 382 VTHQSATNKMKHEKIFLRYSARYDVINQYWRRINVQQGVLY 260
           V+H +  N  K +   ++Y+   D+ +     INVQ  VLY
Sbjct: 667 VSHANQRNMYKLDLKNMKYTRSADLSSYNCVPINVQFSVLY 707


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 117 LGNCCYYWI 91
           +GNCC  WI
Sbjct: 73  VGNCCVIWI 81


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 117 LGNCCYYWI 91
           +GNCC  WI
Sbjct: 73  VGNCCVIWI 81


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 220 DLFPLLCDKYVLFD 261
           +L P+LCD +V  D
Sbjct: 105 ELGPMLCDSWVSLD 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,577
Number of Sequences: 438
Number of extensions: 2457
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)