Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_N03
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23516-4|AAG38880.1|  210|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U80452-15|AAB37848.1|  160|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U23516-4|AAG38880.1|  210|Caenorhabditis elegans Hypothetical
           protein B0416.3 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 214 AFCTQHVEYILTHCTLSHLFLYFWVNFIIFSFIFYNRISRMNKVGK*VHIGAVHIIQ-RG 38
           ++C + V  +L    +S L + F+V  IIF   F N  S M  V   + +G+V I    G
Sbjct: 47  SYCGRRVHVLLLTKLISVLTIPFYVAIIIFISFFGNATSVMFSV---IILGSVLISTCYG 103

Query: 37  GFMHYLPCIVP 5
            F     C++P
Sbjct: 104 AFRGAKMCLIP 114


>U80452-15|AAB37848.1|  160|Caenorhabditis elegans Hypothetical
           protein C16C8.10 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 50  NMDCSNMYLLTYFIHPTNPVIKNKTKNYK 136
           N + + +  L YF  P++P IK +  NYK
Sbjct: 92  NGNLNEISFLAYFCKPSSPTIKLQNDNYK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,719
Number of Sequences: 27780
Number of extensions: 274753
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)