Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M22
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    29   0.71 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.2  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    25   6.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   6.6  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    25   6.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +1

Query: 118 KNINIKYTHYKNNYGKLKHIMFLCKHVSKKNISIIIGRLTFKKNISQLSKMRTR 279
           K++NIK  H  ++   +  +    + +SK+N +I +G+   ++  SQLS +RTR
Sbjct: 811 KSVNIKLEHISDSMQSV--LDNYRESISKQNEAIEMGKRDIEEITSQLSILRTR 862


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGKLKHIMFLCKHVSKKNISIIIGRLTFKKNISQLSKMRTRLRHNL 294
           + N+NIK        GK+  +   CK + K+N+ +   R    + + +L  + T  + + 
Sbjct: 348 IHNVNIK--QITTLIGKMSQVQIECKRLRKENLFLQSERTHLLRELEELRHLATSAKEDF 405

Query: 295 FR 300
            +
Sbjct: 406 VK 407


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 33  THEIPNEVAGN-SSFPYITINTCFH 104
           +HE P+++    SS  YI + TCFH
Sbjct: 8   SHEFPSQIKRCLSSSKYIQLATCFH 32


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 257 CDMFFLNVSLPIIILMFFLETCLHKN 180
           C + FL+ +LP+  + FF+++ L K+
Sbjct: 724 CKLAFLSGNLPVSYVRFFMDSALPKS 749


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 134 LILIFLTYAFMKTSIDSYVRKTTVASYFIRYFVSFVVIDIV 12
           LIL  + +  ++  +DS++     + Y I  F SFV+ D++
Sbjct: 58  LILESIGHPHIERIVDSFIDNEAGSVYLITSFKSFVLSDVM 98


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 554 PIKIIFLFKNLLNFANIVQ-SLDLYNQICNV 465
           P+KI F      NF+NIV+ S+++Y+   ++
Sbjct: 339 PVKIEFFVSFFKNFSNIVEGSMEVYSAYLHI 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,341
Number of Sequences: 5004
Number of extensions: 42127
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)