Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M22
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGK 165
           + N N KY +  NNY K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGK 165
           + N N KY +  NNY K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGK 165
           + N N KY +  NNY K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGK 165
           + N N KY +  NNY K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 121 NINIKYTHYKNNYGK 165
           N N KY +  NNY K
Sbjct: 99  NYNNKYNYNNNNYNK 113


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 121 NINIKYTHYKNNY 159
           N N  Y +Y NNY
Sbjct: 93  NYNNNYNNYNNNY 105


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGKLK 171
           + + N  Y +Y NNY   K
Sbjct: 304 ISSNNYNYKNYNNNYNSKK 322


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 115 VKNINIKYTHYKNNYGKLK 171
           + + N  Y +Y NNY   K
Sbjct: 315 ISSNNYNYKNYNNNYNSKK 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,752
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)