Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M21
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    43   1e-05
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   6.5  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    24   8.6  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = -3

Query: 368 NNFLGLFPYIFTRTRHXXXXXXXXXXXXXXXXLYG*IKNTNHIFIHIIPQGTPYILIPFX 189
           +N L L PY +  T                  + G  ++   +F   +P GTP  LIP  
Sbjct: 107 SNLLRLIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPLL 166

Query: 188 XXXXXXXXXIRPGTLAVRLTANIIAGHLLITLL 90
                     R  +L +RL ANIIAGHL +++L
Sbjct: 167 VLIEFVSYIARGLSLGIRLGANIIAGHLTMSIL 199


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 289 RGIDKDKDIVKCLVLVKIYGNNPKKL 366
           R + K+K  + C  L K+YG +P+ +
Sbjct: 58  RRLKKEKSSMSCSELAKLYGVSPESI 83


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 180 NNYYKWY*NIGCSLWNYMNKYVI 248
           N++Y W+       WNY N +++
Sbjct: 360 NSFYDWHNGATQVKWNYKNPHIL 382


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 243 HIYSYNSTRNTLYFNTIYSNY 181
           +IYSYN  R+ L  N +   Y
Sbjct: 529 YIYSYNGERDELVLNNLRPRY 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,220
Number of Sequences: 5004
Number of extensions: 15886
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)