Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_M19
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 208 5e-55
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 208 6e-55
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.68
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.2
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 27 1.6
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.6
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 3.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 8.3
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.3
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 8.3
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 208 bits (508), Expect = 5e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = -2
Query: 474 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 295
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 294 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 115
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 114 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 7
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 208 bits (507), Expect = 6e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = -2
Query: 474 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 295
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 294 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 115
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 114 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 7
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.68
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 34 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 198
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 199 TDIDALRYN 225
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 362 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 478
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 379 SVQSWRHC-RHQRQWCSSKGYATQSIPWKDRSRVQRYCSCSRCDCQQACSR 230
S+Q C +H RQ+C+ GY + S V Y SC C + A SR
Sbjct: 36 SLQKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVP-YYSCLMCKREIAASR 85
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -1
Query: 403 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRY 272
+ L H SW + R+ C +KGY PW + Y
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 464 EFVIFEPCVTKLDG 505
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 541 NLNEFGRPMLSRSVKLCNT-RLEDDELQGLPPRHQGLVRSQVPH 413
N +E + S S++ C T R DD + R G +R + PH
Sbjct: 600 NYDELFDVLSSISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 274 NVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 408
N + + C V H + T+ V N +H++ ERNS+
Sbjct: 81 NKIASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 103 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 267
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 208 DALRYNPSANTLVDNHTES 264
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 177 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 82
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 123 EAKAAGKTVNLKRQPAPPKAAHIVSGT 43
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 62 PTSSVELRNPSYLRRS 15
PT SV+LRN S LRR+
Sbjct: 534 PTVSVDLRNSSILRRA 549
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 215 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 36
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 35 P 33
P
Sbjct: 115 P 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,228
Number of Sequences: 5004
Number of extensions: 48341
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -