Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M18
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    28   1.3  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   4.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.2  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.2  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 398 TPNRNKRVFEALLKAPLYILTYLTTSAKNIFN 493
           T N +KR+ E + +A   I  Y+T+ A++I N
Sbjct: 290 TANNHKRIMEKITRAKPNIPFYVTSDARDIIN 321


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 83  YSLELSFFVIVACISCSHYYMFGI 12
           YS+ +S+ ++V C+SCS  Y  GI
Sbjct: 527 YSI-VSWHLLVLCVSCSEQYAAGI 549


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 380 KLNIHNTPNRNKRVFEALLKAPLY 451
           K+ I ++PNR+  + +A +++P Y
Sbjct: 24  KIKISDSPNRHHNLVDAFMQSPSY 47


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 386 NIHNTPNRNKRVFEALLKAPLYILTYLTT 472
           +IH+ PN+ KR  EA  +  +Y L +  T
Sbjct: 49  SIHHAPNKRKRKDEAPFRLCIYTLFHAHT 77


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 486 YLIHTLKTKVFEIIKLQNIRFFEVKLLYRRWKKIYR 593
           YL+ T K +V EII  QN    E  +   RW K++R
Sbjct: 58  YLLTTFKDRVNEIINEQN---EENVIDQSRWSKLWR 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,567
Number of Sequences: 5004
Number of extensions: 44541
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)