Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M16
         (786 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50853-1|CAA90705.1|  277|Homo sapiens CLPP protein.                  326   7e-89
BC002956-1|AAH02956.1|  277|Homo sapiens ClpP caseinolytic pepti...   326   7e-89
AK127088-1|BAC86822.1|  201|Homo sapiens  RH-linked) (EPB41).  p...    31   4.7  

>Z50853-1|CAA90705.1|  277|Homo sapiens CLPP protein.
          Length = 277

 Score =  326 bits (800), Expect = 7e-89
 Identities = 149/218 (68%), Positives = 182/218 (83%)
 Frame = -3

Query: 718 IXNVYNVTRQINTSLPKLLGMIPIVVEQTGRGERAYDIYSRLLRERIICLMGPINDDISS 539
           + N   + R ++ +  + L +IPIVVEQTGRGERAYDIYSRLLRERI+C+MGPI+D ++S
Sbjct: 38  LQNGLALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVAS 97

Query: 538 LIVAQLLFLQSESSKKPVHLYINSPGGAVTAGLGIYDTMQYITPPIATWCVGQACSMASL 359
           L++AQLLFLQSES+KKP+H+YINSPGG VTAGL IYDTMQYI  PI TWCVGQA SM SL
Sbjct: 98  LVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSL 157

Query: 358 LLAAGAPGMRHALPNSRIMIHQPSGGVRGQATDIQIQAEEILKLKAQINNLYVRHTGLAL 179
           LLAAG PGMRH+LPNSRIMIHQPSGG RGQATDI IQAEEI+KLK Q+ N+Y +HT  +L
Sbjct: 158 LLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSL 217

Query: 178 EKVQSSMERDCFMSPIEAKTFGIIDTVLEHPPSHAVEQ 65
           + ++S+MERD +MSP+EA+ FGI+D VL HPP    ++
Sbjct: 218 QVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDE 255


>BC002956-1|AAH02956.1|  277|Homo sapiens ClpP caseinolytic
           peptidase, ATP-dependent, proteolytic subunit homolog
           (E. col protein.
          Length = 277

 Score =  326 bits (800), Expect = 7e-89
 Identities = 149/218 (68%), Positives = 182/218 (83%)
 Frame = -3

Query: 718 IXNVYNVTRQINTSLPKLLGMIPIVVEQTGRGERAYDIYSRLLRERIICLMGPINDDISS 539
           + N   + R ++ +  + L +IPIVVEQTGRGERAYDIYSRLLRERI+C+MGPI+D ++S
Sbjct: 38  LQNGLALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVAS 97

Query: 538 LIVAQLLFLQSESSKKPVHLYINSPGGAVTAGLGIYDTMQYITPPIATWCVGQACSMASL 359
           L++AQLLFLQSES+KKP+H+YINSPGG VTAGL IYDTMQYI  PI TWCVGQA SM SL
Sbjct: 98  LVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSL 157

Query: 358 LLAAGAPGMRHALPNSRIMIHQPSGGVRGQATDIQIQAEEILKLKAQINNLYVRHTGLAL 179
           LLAAG PGMRH+LPNSRIMIHQPSGG RGQATDI IQAEEI+KLK Q+ N+Y +HT  +L
Sbjct: 158 LLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSL 217

Query: 178 EKVQSSMERDCFMSPIEAKTFGIIDTVLEHPPSHAVEQ 65
           + ++S+MERD +MSP+EA+ FGI+D VL HPP    ++
Sbjct: 218 QVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDE 255


>AK127088-1|BAC86822.1|  201|Homo sapiens  RH-linked) (EPB41).
           protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 256 QIQAEEILKLKAQINNLYVRHTGLALEKVQSSME 155
           + Q EE   L+ + +N+YVRH+ L LE++  + E
Sbjct: 5   ETQLEEKNSLRVEGDNIYVRHSNLMLEELDKAQE 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,204,584
Number of Sequences: 237096
Number of extensions: 2518083
Number of successful extensions: 5370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5370
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)