Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_M12
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    29   0.45 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.0  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.4  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.2  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   5.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 266 FGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYAC-MMMFFLANMIEGQLISSGAF 90
           F    +++ I +G+ IF+WL         W     LYA   ++ F    + G ++S+   
Sbjct: 311 FSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVL 370

Query: 89  EISLNN 72
           +I+ ++
Sbjct: 371 DIAFHD 376


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 515 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 387
           +LL C +LF +T  +  S      SI  I T +G   ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 311 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 144
           Y+  GF MYL  ++GFG  +V     + V  F  ++     WW+  +   L+  ++
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 71  CC*EISQKLQRILAVLQSYLLKRTSSCMHTACFQGTNSTKQVVVCST 211
           CC E  +K +  L V+  +L    S C     FQ T    Q +V +T
Sbjct: 650 CCYEGDEKDEERLTVISEFLKSCFSGCQDRRSFQITMEDFQAIVDTT 696


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 552 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 472
           ++ +  YV+PKR++      + TN YQ
Sbjct: 57  FETISDYVIPKRELCNKTITVCTNHYQ 83


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 270 WFWQNVGHHVYTQRCEY 220
           W WQN+G   YT+ C++
Sbjct: 75  WNWQNLGISRYTKDCDF 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 293 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 186
           N Y+   +GF     ++ +LSG  I   LN P  AW
Sbjct: 46  NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 284  LSRIIGFGKMLVIMCILSGVNIFAWLNK 201
            +S++  FG  L++  +L G+N + W +K
Sbjct: 1471 MSQLSAFGVKLLLPTLLDGLNEYNWRSK 1498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,492
Number of Sequences: 5004
Number of extensions: 60893
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)